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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc02105 and SMc02104 are separated by 4 nucleotides
SMc02104 and SMc02103 are separated by 13 nucleotides
SMc02103 and SMc02102 are separated by 141 nucleotides
SMc02102 and SMc02101 are separated by 185 nucleotides
SMc02105: SMc02105 - hypothetical protein, at 1,604,216 to 1,605,403
SMc02105
SMc02104: SMc02104 - hypothetical protein, at 1,605,408 to 1,606,133
SMc02104
SMc02103: SMc02103 - hypothetical protein, at 1,606,147 to 1,606,611
SMc02103
SMc02102: SMc02102 - hypothetical protein, at 1,606,753 to 1,607,571
SMc02102
SMc02101: SMc02101 - 30S ribosomal protein S2, at 1,607,757 to 1,608,524
SMc02101
Group
Condition
SMc02105
SMc02104
SMc02103
SMc02102
SMc02101
carbon source
L-Histidine (C)
-0.0
N.D.
-0.4
-3.2
N.D.
stress
Sisomicin 0.004 mg/ml
+0.0
N.D.
+0.2
-3.5
N.D.
stress
Fusidic 0.0001 mg/ml
+0.0
N.D.
+0.0
-3.3
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.0
N.D.
-0.8
-2.1
N.D.
nitrogen source
L-Arginine (N)
+0.3
N.D.
+1.2
-4.4
N.D.
nutrient
L-Histidine
+0.3
N.D.
-0.1
-3.1
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.0
N.D.
-0.2
-2.6
N.D.
stress
A22 0.02 mg/ml
+0.0
N.D.
+0.3
-2.9
N.D.
carbon source
L-Lysine (C)
+0.0
N.D.
-0.2
-2.3
N.D.
stress
Cobalt chloride 0.16 mM
-0.1
N.D.
+0.5
-2.8
N.D.
temperature
LB, 30C
+0.0
N.D.
+0.3
-2.7
N.D.
stress
Cisplatin 0.001 mg/ml
-0.4
N.D.
+0.1
-2.0
N.D.
stress
Nickel (II) chloride 1 mM
+0.3
N.D.
-0.1
-2.4
N.D.
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.2
N.D.
+0.2
-2.2
N.D.
stress
Paraquat dichloride 0.3 mg/ml
+0.1
N.D.
+0.3
-2.3
N.D.
nitrogen source
L-Leucine (N)
+0.2
N.D.
+0.2
-2.4
N.D.
nitrogen source
L-Asparagine (N)
+0.1
N.D.
+0.5
-2.4
N.D.
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.4
N.D.
-0.1
-2.1
N.D.
nitrogen source
Uridine (N)
+0.4
N.D.
-0.3
-1.9
N.D.
nutrient
L-Histidine
+0.5
N.D.
+0.4
-2.8
N.D.
nitrogen source
nitrate (N)
+0.3
N.D.
-0.2
-1.9
N.D.
nitrogen source
L-Serine (N)
+0.4
N.D.
+0.1
-2.2
N.D.
nutrient
Min media with glucose
+0.2
N.D.
+0.4
-2.3
N.D.
stress
Paraquat dichloride 0.2 mg/ml
+0.3
N.D.
+0.2
-2.0
N.D.
nutrient
L-Lysine
+0.5
N.D.
+0.2
-2.1
N.D.
lb
LB
+0.3
N.D.
+0.5
-2.2
N.D.
nitrogen source
L-Glutamine (N)
+0.1
N.D.
+0.4
-1.9
N.D.
nutrient
L-Lysine
+0.2
N.D.
+0.4
-2.0
N.D.
pH
LB, pH8
+0.2
N.D.
+0.6
-2.0
N.D.
stress
D-Cycloserine 0.05 mg/ml
+0.2
N.D.
+0.6
-1.8
N.D.
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