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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SMc01495 and SMc01814 are separated by 199 nucleotides
SMc01814 and SMc01815 are separated by 31 nucleotides
SMc01815 and SMc01816 are separated by 64 nucleotides
SMc01816 and SMc01817 are separated by 104 nucleotides
SMc01495: SMc01495 - transcriptional regulator, at 2,634,580 to 2,635,533
SMc01495
SMc01814: SMc01814 - oxidoreductase, at 2,635,733 to 2,637,094
SMc01814
SMc01815: SMc01815 - Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2)
(from data)
, at 2,637,126 to 2,638,439
SMc01815
SMc01816: SMc01816 - oxidoreductase, at 2,638,504 to 2,639,526
SMc01816
SMc01817: SMc01817 - transcriptional regulator, at 2,639,631 to 2,640,530
SMc01817
Group
Condition
SMc01495
SMc01814
SMc01815
SMc01816
SMc01817
nitrogen source
Uridine (N)
-0.2
-5.6
-4.8
-0.6
N.D.
carbon source
D-Glucosamine Hydrochloride (C)
-4.5
+0.0
+0.1
-0.1
N.D.
nitrogen source
L-Arginine (N)
-3.6
+0.1
+0.0
-0.1
N.D.
carbon source
L-Histidine (C)
-3.4
+0.1
+0.0
+0.1
N.D.
carbon source
L-Glutamine (C)
-2.7
-0.1
+0.0
-0.0
N.D.
carbon source
L-Lysine (C)
-2.2
-0.1
-0.0
+0.2
N.D.
carbon source
L-Proline (C)
-2.0
+0.1
+0.0
-0.1
N.D.
nitrogen source
L-Asparagine (N)
-1.5
-0.2
+0.1
-0.3
N.D.
carbon source
L-Fucose (C)
-2.0
-0.1
+0.1
+0.0
N.D.
carbon source
pipercolic (C)
-1.9
-0.1
+0.2
+0.0
N.D.
carbon source
Uridine (C)
+0.1
-0.9
-0.8
-0.2
N.D.
nutrient
L-Lysine
-1.6
+0.2
+0.0
-0.3
N.D.
carbon source
L-Lysine (C)
-1.8
+0.1
+0.1
+0.1
N.D.
nitrogen source
NAG (N)
-1.2
-0.2
+0.1
-0.3
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.6
+0.1
-0.0
+0.0
N.D.
carbon source
acetate (C)
-1.7
+0.1
+0.1
+0.1
N.D.
carbon source
Xylobiose (C)
-1.4
-0.1
-0.1
+0.1
N.D.
carbon source
L-Alanine (C)
-1.4
+0.1
+0.0
-0.3
N.D.
carbon source
D-Maltose (C)
-1.3
-0.1
-0.1
+0.1
N.D.
carbon source
Beta-Lactose (C)
-1.4
+0.0
-0.0
+0.1
N.D.
carbon source
L-Alanine (C)
-1.3
+0.2
-0.2
-0.1
N.D.
carbon source
acetate (C)
-1.2
+0.0
+0.0
-0.1
N.D.
stress
Aluminum chloride
-1.0
+0.1
+0.2
-0.2
N.D.
stress
Polymyxin B sulfate 0.00005 mg/ml
-1.5
+0.5
+0.4
-0.2
N.D.
nitrogen source
Gelatin (N)
-0.9
-0.1
+0.3
-0.1
N.D.
carbon source
pipercolic (C)
-1.0
+0.1
+0.2
+0.1
N.D.
nitrogen source
nitrate (N)
+0.7
-0.4
+0.0
-0.3
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.8
+0.3
-0.3
-0.0
N.D.
tsb
Day4 LB
+1.1
-0.2
-0.3
+0.1
N.D.
pH
LB, pH6
+1.2
-0.3
+0.1
+0.1
N.D.
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