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Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20820 and SM_b20821 are separated by 80 nucleotides
SM_b20821 and SM_b20822 are separated by 244 nucleotides
SM_b20822 and SM_b20823 are separated by 9 nucleotides
SM_b20823 and SM_b20824 are separated by 610 nucleotides
SM_b20820: SM_b20820 - ferredoxin reductase, at 608,691 to 609,920
_b20820
SM_b20821: SM_b20821 - ATPGTP-binding hydroxymethyltransferase, at 610,001 to 610,801
_b20821
SM_b20822: SM_b20822 - cell surface polysaccharide export ABC-2 transporter permease, close relative to wzm1Y20833, at 611,046 to 611,870
_b20822
SM_b20823: SM_b20823 - cell surface saccharide synthesis protein, at 611,880 to 612,911
_b20823
SM_b20824: SM_b20824 - hypothetical protein, at 613,522 to 615,858
_b20824
Group
Condition
SM
_b20820
SM
_b20821
SM
_b20822
SM
_b20823
SM
_b20824
carbon source
Myristic (C)
-0.2
+0.2
-0.7
-3.5
-0.1
carbon source
Myristic (C)
+0.1
+0.0
-0.5
-3.2
-0.1
nutrient
L-Lysine
-0.0
-0.3
-0.7
-1.4
-0.1
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.2
-1.0
-0.8
-0.9
-0.0
pH
LB, pH8
+0.1
-0.3
-0.3
-1.5
-0.3
carbon source
D-Glucose (C)
-0.2
-0.0
-0.6
-1.4
-0.0
nutrient
Min media with glucose
-0.1
-0.2
-0.2
-1.5
-0.2
stress
D-Cycloserine 0.05 mg/ml
+0.0
-0.2
-0.6
-1.2
-0.1
stress
Cisplatin 0.001 mg/ml
-0.1
-0.6
-1.0
-0.4
+0.0
nutrient
L-Lysine
-0.1
+0.1
-0.7
-1.4
+0.0
stress
Thallium(I) acetate 0.001 mg/ml
+0.0
-0.6
-1.0
-0.2
-0.1
pH
LB, pH8
-0.1
-0.4
-0.3
-0.8
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
+0.1
-1.7
+0.1
-0.3
stress
Paraquat dichloride 0.3 mg/ml
-0.1
-0.1
-1.5
-0.1
-0.1
carbon source
D-Salicin (C)
-0.2
-0.3
-0.3
-1.0
-0.1
nitrogen source
nitrate (N)
-0.1
-0.3
-0.4
-1.0
-0.0
nutrient
L-Histidine
+0.2
-0.2
-0.6
-1.0
-0.1
carbon source
D-Maltose (C)
+0.1
-0.1
-0.2
-1.5
+0.0
carbon source
succinate (C)
-0.0
-0.4
+0.1
-1.4
+0.0
nutrient
Min media with glucose
+0.2
-0.1
-0.4
-1.2
-0.1
nitrogen source
L-Arginine (N)
+0.1
-0.5
+0.3
-1.4
+0.0
stress
Paraquat dichloride 0.2 mg/ml
+0.3
+0.0
-1.1
-0.5
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.4
+0.3
-1.2
-0.1
+0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
+0.2
-1.3
-0.2
-0.2
nitrogen source
L-Leucine (N)
+0.1
+0.1
-0.5
-1.2
+0.1
nitrogen source
L-Serine (N)
+0.4
-0.1
-0.3
-1.0
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.0
+0.3
-0.7
-0.8
+0.3
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
+0.0
-0.2
-1.3
+0.8
+0.1
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.3
-0.3
-1.3
+1.6
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
+0.2
+0.5
-0.8
+0.2
+0.2
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