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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20095 and SM_b20096 are separated by 28 nucleotides
SM_b20096 and SM_b20097 are separated by 1 nucleotides
SM_b20097 and SM_b20098 are separated by 8 nucleotides
SM_b20098 and SM_b20099 overlap by 4 nucleotides
SM_b20095: SM_b20095 - pyruvate oxidase, at 103,207 to 105,024
_b20095
SM_b20096: SM_b20096 - hypothetical protein, at 105,053 to 105,493
_b20096
SM_b20097: SM_b20097 - oxidoreductase, at 105,495 to 106,724
_b20097
SM_b20098: SM_b20098 - hypothetical protein, at 106,733 to 107,128
_b20098
SM_b20099: SM_b20099 - maltose alpha-D-glucosyltransferase, at 107,125 to 108,759
_b20099
Group
Condition
SM
_b20095
SM
_b20096
SM
_b20097
SM
_b20098
SM
_b20099
pH
LB, pH6
-0.1
-0.1
-0.4
-0.8
-0.1
in planta
Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
-0.2
-0.5
-0.3
-0.4
-0.0
stress
Aluminum chloride
-0.0
-0.4
-0.4
-0.4
+0.0
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.2
-0.2
-0.3
-0.7
+0.2
r2a control
R2A control for volatile experiments
-0.3
-0.2
+0.2
-0.8
-0.1
stress
perchlorate 10 mM
-0.2
+0.1
-0.1
-0.8
+0.1
nutrient
Min media with glucose
-0.2
-0.2
-0.2
-0.4
+0.1
nutrient
L-Histidine
-0.1
-0.2
+0.3
-0.5
-0.1
stress
Polymyxin B sulfate 0.00005 mg/ml
+0.2
+0.1
-0.3
-0.3
-0.4
nitrogen source
Gly-DL-Asp (N)
+0.0
-0.0
-0.9
+0.3
-0.0
stress
copper (II) chloride 1 mM
-0.3
+0.1
-0.4
+0.3
-0.1
r2a control
R2A control for volatile experiments
+0.0
+0.3
-0.3
-0.5
+0.1
stress
Chlorite 0.1 mM
-0.0
+0.4
-0.5
-0.2
-0.0
pH
LB, pH8
+0.1
-0.3
-0.3
+0.3
-0.1
carbon source
5-Aminovaleric (C)
+0.2
-0.4
+0.1
+0.5
-0.3
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
+0.4
+0.1
-0.3
-0.2
+0.1
nitrogen source
nitrate (N)
+0.1
-0.0
-0.3
+0.6
-0.2
carbon source
Beta-Lactose (C)
+0.2
-0.3
+0.2
+0.3
-0.2
stress
Sisomicin 0.004 mg/ml
-0.2
+0.1
+0.3
+0.3
-0.1
nitrogen source
Gelatin (N)
-0.1
+0.2
-0.2
+0.6
-0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
+0.3
+0.1
+0.2
-0.3
stress
Nickel (II) chloride 1 mM
+0.3
-0.3
+0.1
+0.3
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.6
+0.8
-0.6
-0.2
+0.1
nitrogen source
L-Leucine (N)
+0.2
-0.3
-0.1
+1.0
+0.1
nitrogen source
Uridine (N)
+0.2
+0.3
-0.2
+0.6
+0.1
carbon source
Lactitol (C)
+0.3
+0.4
+0.0
+0.3
+0.0
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
+0.4
+0.0
+0.2
+0.3
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.4
+0.5
+0.1
+0.2
+0.1
carbon source
D-Glucose (C)
+0.1
+0.4
+0.2
+0.4
+0.2
nitrogen source
L-Asparagine (N)
-0.3
-0.1
+0.5
+0.9
+0.2
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