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Cofit
Protein
Homologs
Fitness for 5 genes in
Sinorhizobium meliloti 1021
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
SM_b20084 and SM_b20085 are separated by 51 nucleotides
SM_b20085 and SM_b20086 are separated by 197 nucleotides
SM_b20086 and SM_b20087 are separated by 22 nucleotides
SM_b20087 and SM_b20088 are separated by 154 nucleotides
SM_b20084: SM_b20084 - hypothetical protein, at 94,903 to 95,076
_b20084
SM_b20085: SM_b20085 - hypothetical protein, at 95,128 to 95,274
_b20085
SM_b20086: SM_b20086 - hypothetical protein, at 95,472 to 95,774
_b20086
SM_b20087: SM_b20087 - hypothetical protein, at 95,797 to 96,402
_b20087
SM_b20088: SM_b20088 - hypothetical protein, at 96,557 to 98,533
_b20088
Group
Condition
SM
_b20084
SM
_b20085
SM
_b20086
SM
_b20087
SM
_b20088
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
N.D.
-3.1
-0.1
+0.1
stress
6-Pentyl-2H-pyran-2-one 0.4557668333 mM
+0.1
N.D.
-2.4
-0.1
-0.0
carbon source
5-Aminovaleric (C)
-0.1
N.D.
-1.8
-0.2
-0.0
carbon source
D-Xylose (C)
-0.1
N.D.
-1.9
-0.1
-0.1
carbon source
Myristic (C)
+0.2
N.D.
-1.7
-0.5
-0.0
stress
Cisplatin 0.001 mg/ml
+0.6
N.D.
-2.2
-0.3
-0.0
carbon source
D-Mannose (C)
-0.2
N.D.
-0.8
-0.5
-0.1
carbon source
methyl 3-keto-a-D-glucopyranoside (C)
-0.0
N.D.
-1.0
-0.4
-0.0
carbon source
D-Glucose (C)
+0.1
N.D.
-1.5
-0.1
-0.0
stress
Paraquat dichloride 0.05 mg/ml
-0.0
N.D.
-0.9
-0.4
-0.0
carbon source
D-Arabinose (C)
-0.2
N.D.
-1.0
-0.2
+0.0
nitrogen source
L-Serine (N)
+0.2
N.D.
-1.6
+0.1
-0.0
stress
Nickel (II) chloride 1 mM
-0.3
N.D.
-0.6
-0.3
+0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
N.D.
-1.8
+0.4
-0.1
nitrogen source
nitrate (N)
+0.3
N.D.
-1.2
-0.0
-0.1
stress
Fusidic 0.0001 mg/ml
+0.4
N.D.
-1.3
-0.2
+0.0
carbon source
D-Glucose (C)
+0.2
N.D.
-0.7
-0.3
-0.2
carbon source
Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
+0.4
N.D.
-0.9
-0.5
+0.0
nutrient
L-Histidine
+0.1
N.D.
-1.0
+0.1
-0.1
nitrogen source
L-Arginine (N)
+0.1
N.D.
-1.2
+0.4
+0.1
stress
perchlorate 10 mM
-0.0
N.D.
-1.5
+0.9
-0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.0
N.D.
-1.2
+0.6
+0.0
stress
Thallium(I) acetate 0.0025 mg/ml
+0.2
N.D.
-0.7
+0.1
+0.1
stress
Polymyxin B sulfate 0.00005 mg/ml
-0.0
N.D.
-0.5
+0.6
-0.3
nitrogen source
L-Asparagine (N)
+0.4
N.D.
-0.8
+0.4
-0.0
volatiles
R2A-HEPES with volatiles from Trichoderma atroviridae IMI
-0.1
N.D.
+0.7
-0.4
-0.2
r2a-hepes control
R2A-HEPES control for volatile experiments
-0.2
N.D.
+1.1
-0.0
+0.0
stress
copper (II) chloride 1 mM
+0.4
N.D.
+0.2
+0.7
+0.3
stress
Cisplatin 0.0005 mg/ml
+0.5
N.D.
+1.2
+0.0
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
N.D.
+0.8
+0.5
+0.2
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