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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS32390 and RR42_RS32395 are separated by 219 nucleotides
RR42_RS32395 and RR42_RS32400 are separated by 360 nucleotides
RR42_RS32400 and RR42_RS32405 are separated by 203 nucleotides
RR42_RS32405 and RR42_RS32410 overlap by 4 nucleotides
RR42_RS32390: RR42_RS32390 - citrate synthase, at 2,661,543 to 2,662,772
_RS32390
RR42_RS32395: RR42_RS32395 - IclR family transcriptional regulator, at 2,662,992 to 2,663,720
_RS32395
RR42_RS32400: RR42_RS32400 - hypothetical protein, at 2,664,081 to 2,664,551
_RS32400
RR42_RS32405: RR42_RS32405 - anti-sigma factor, at 2,664,755 to 2,665,546
_RS32405
RR42_RS32410: RR42_RS32410 - RNA polymerase subunit sigma-24, at 2,665,543 to 2,666,091
_RS32410
Group
Condition
RR42
_RS32390
RR42
_RS32395
RR42
_RS32400
RR42
_RS32405
RR42
_RS32410
carbon source
Protocatechuic Acid (C)
-0.2
-1.4
-0.4
+0.1
N.D.
carbon source
Protocatechuic Acid (C)
-0.3
-0.4
-0.3
-0.4
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.1
-0.8
-0.0
-0.2
N.D.
carbon source
Disodium Glutarate (C)
-0.2
-1.2
+0.0
+0.4
N.D.
carbon source
L-Malic (C)
+0.1
-0.5
-0.2
-0.3
N.D.
carbon source
adipate (C)
-0.1
-0.7
-0.2
+0.1
N.D.
carbon source
Dodecandioic (C)
+0.2
-0.5
-0.2
-0.2
N.D.
carbon source
Pimelic (C)
-0.0
-0.4
-0.4
+0.2
N.D.
carbon source
Ethanol (C)
+0.2
-0.6
-0.1
-0.1
N.D.
carbon source
adipate (C)
-0.2
-0.4
-0.2
+0.2
N.D.
carbon source
Octanoic (C)
+0.3
-0.3
-0.7
+0.1
N.D.
carbon source
L-Histidine (C)
-0.1
-0.5
+0.2
-0.2
N.D.
carbon source
Disodium Glutarate (C)
+0.1
-0.8
+0.1
+0.1
N.D.
nitrogen source
L-Tryptophan (N)
+0.1
-0.6
+0.2
-0.3
N.D.
carbon source
Pimelic (C)
+0.1
-0.4
-0.3
+0.1
N.D.
carbon source
Hexanoic (C)
+0.2
-0.5
-0.3
+0.2
N.D.
carbon source
Suberic (C)
+0.1
-0.6
-0.1
+0.2
N.D.
stress
R2A with Chloride 300 mM
-0.2
+0.3
-0.2
-0.3
N.D.
carbon source
L-Glutamine (C)
-0.1
-0.3
+0.4
-0.4
N.D.
carbon source
Heptanoic (C)
+0.1
-0.7
+0.0
+0.3
N.D.
carbon source
L-Alanine (C)
+0.0
-0.4
+0.4
-0.2
N.D.
carbon source
Carbon source Phenylacetic 2.5 mM
+0.2
-0.2
-0.5
+0.3
N.D.
carbon source
D-Lactate (C)
+0.3
-0.4
+0.1
-0.2
N.D.
stress
R2A with Chlorite 4 mM
-0.1
+0.4
+0.2
-0.2
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
+0.3
+0.4
-0.2
-0.1
N.D.
stress
R2A with Cisplatin 0.001 mg/ml
-0.3
+0.7
-0.0
+0.0
N.D.
stress
R2A with Sisomicin 0.035 mg/ml
+0.2
+0.4
+0.1
-0.3
N.D.
stress
R2A with Lomefloxacin 0.001 mM
+0.1
+0.2
+0.7
+0.2
N.D.
carbon source
Carbon source Phenylacetic 2.5 mM
+0.4
+0.5
+0.0
+0.3
N.D.
stress
R2A with Nickel (II) chloride 0.5 mM
+0.3
+0.6
-0.0
+0.4
N.D.
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