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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS02215 and RR42_RS02220 are separated by 202 nucleotides
RR42_RS02220 and RR42_RS02225 are separated by 27 nucleotides
RR42_RS02225 and RR42_RS02230 are separated by 67 nucleotides
RR42_RS02230 and RR42_RS02235 overlap by 4 nucleotides
RR42_RS02215: RR42_RS02215 - fumarate reductase, at 490,896 to 491,609
_RS02215
RR42_RS02220: RR42_RS02220 - LysR family transcriptional regulator, at 491,812 to 492,753
_RS02220
RR42_RS02225: RR42_RS02225 - ABC transporter substrate-binding protein, at 492,781 to 493,764
_RS02225
RR42_RS02230: RR42_RS02230 - sulfolactate dehydrogenase, at 493,832 to 494,836
_RS02230
RR42_RS02235: RR42_RS02235 - 3-phosphoglycerate dehydrogenase, at 494,833 to 495,768
_RS02235
Group
Condition
RR42
_RS02215
RR42
_RS02220
RR42
_RS02225
RR42
_RS02230
RR42
_RS02235
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-0.3
+0.1
-1.6
-0.4
-0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.3
-0.1
+0.2
-0.5
-1.2
carbon source
Heptanoic (C)
-0.4
-0.1
+0.2
-0.6
-0.5
nitrogen source
Glycine (N)
-0.4
-0.1
-0.9
+0.0
-0.2
carbon source
Octanoic (C)
-0.3
-0.1
-0.2
+0.2
-0.9
nitrogen source
nitrite (N)
-0.1
-0.2
+0.4
-0.2
-0.9
carbon source
Hexanoic (C)
-0.4
+0.1
+0.5
-0.5
-0.7
carbon source
Hexanoic (C)
-0.2
-0.1
-0.4
+0.4
-0.6
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.5
-0.3
-0.3
+0.3
-0.1
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.2
-0.4
-0.3
+0.4
-0.3
stress
R2A with Dimethyl Sulfoxide 5 vol%
+0.3
+0.3
-1.2
+0.5
-0.6
stress
R2A with Nickel (II) chloride 0.35 mM
+0.6
-0.1
-0.9
-0.0
-0.3
carbon source
adipate (C)
-0.4
+0.0
+0.7
-0.5
-0.3
stress
R2A with Vancomycin 0.5 mg/ml
+0.8
-0.1
-1.1
-0.4
+0.1
r2a
R2A
+0.1
+0.2
-0.3
+0.3
-0.7
nitrogen source
L-Valine (N)
+0.7
+0.1
-0.0
-0.1
-0.6
carbon source
L-Malic (C)
+0.7
+0.1
+0.2
-0.2
-0.6
carbon source
Valeric (C)
+0.4
+0.1
+0.3
-0.1
-0.6
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.8
+0.1
-0.5
+0.1
-0.2
r2a
R2A
+0.4
+0.2
-0.7
+0.6
-0.2
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
+0.1
-0.1
-0.4
+0.4
+0.4
carbon source
L-Phenylalanine (C)
+0.5
+0.1
+0.7
-0.0
-0.6
nitrogen source
L-Valine (N)
+0.4
+0.1
-0.4
+0.0
+0.6
carbon source
L-Alanine (C)
+0.5
-0.3
+0.7
-0.3
+0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.7
+0.4
-0.1
-0.3
+0.1
carbon source
propionate (C)
+1.0
+0.0
-0.2
+0.1
+0.2
carbon source
a-Ketoglutaric (C)
+0.4
-0.1
+0.7
+0.3
-0.0
stress
R2A with copper (II) chloride 0.25 mM
+0.2
+0.3
-0.1
+0.1
+0.9
carbon source
L-Glutamine (C)
+0.6
+0.1
-0.1
+0.2
+0.6
carbon source
4-Hydroxybenzoic Acid (C)
+0.4
+0.1
+0.7
+0.2
+0.2
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