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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas syringae pv. syringae B728a
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psyr_2225 and Psyr_2226 overlap by 4 nucleotides
Psyr_2226 and Psyr_2227 are separated by 297 nucleotides
Psyr_2227 and Psyr_2228 are separated by 399 nucleotides
Psyr_2228 and Psyr_2229 are separated by 53 nucleotides
Psyr_2225: Psyr_2225 - methenyltetrahydrofolate cyclohydrolase / 5,10-methylenetetrahydrofolate dehydrogenase (NADP+), at 2,586,853 to 2,587,755
_2225
Psyr_2226: Psyr_2226 - formyltetrahydrofolate deformylase, at 2,587,752 to 2,588,618
_2226
Psyr_2227: Psyr_2227 - conserved hypothetical protein, at 2,588,916 to 2,589,371
_2227
Psyr_2228: Psyr_2228 - conserved hypothetical protein, at 2,589,771 to 2,590,499
_2228
Psyr_2229: Psyr_2229 - TonB-dependent siderophore receptor, at 2,590,553 to 2,592,664
_2229
Group
Condition
Psyr
_2225
Psyr
_2226
Psyr
_2227
Psyr
_2228
Psyr
_2229
carbon source
Citric Acid (C)
+0.3
-0.6
-2.2
-0.9
+0.0
stress
KB with Nalidixic 12.5 ug/ml
-0.7
-0.9
-1.9
+0.0
+0.1
in planta
apoplastic; Pepper
+0.3
-1.0
-2.2
-0.2
-0.1
in planta
apoplastic; Pepper
+0.2
-0.1
-1.2
-1.2
-0.2
aphid
library passed through aphids in food, 72 hours
-0.1
-0.7
-1.5
-0.1
-0.1
in planta
apoplastic, grinding recovery; Green bean
+0.4
+0.3
-1.9
-0.6
-0.4
in planta
apoplastic, grinding recovery; Green bean
-0.3
+0.4
-0.9
-1.4
+0.2
in planta
epiphytic; Green bean
+0.6
-1.0
-1.3
-0.1
-0.1
stress
KB with Gamma-Aminobutyric Acid Hydrochloride 10 mM
-0.8
-0.0
-1.2
+0.2
-0.1
stress
KB with dihydrojasmonic, methyl ester 10 mM
+0.5
-0.5
-1.1
-0.4
+0.0
stress
KB with Methyl 6-Hydroxyangolensate 10 mM
-0.4
-0.3
-1.1
+0.4
-0.1
stress
KB with Acridine orange 62.5 ug/ml
+0.7
-0.8
-1.2
-0.3
+0.1
stress
KB with Solanesol 10 mM
+0.6
-0.0
-1.5
-0.4
-0.1
stress
KB with Mitomycin C 0.625 ug/ml
+1.1
-0.8
-2.0
+0.1
+0.4
stress
KB with Gossypetin 10 mM
+0.5
+0.2
-0.7
-0.7
-0.4
stress
KB with Estragole 10 mM
-0.3
+0.5
-1.1
+0.2
-0.4
stress
KB with Benzalkonium Chloride 6.25 ug/ml
+0.9
-0.6
-1.1
-0.6
+0.4
carbon source
a-Ketoglutaric (C)
+0.9
-0.7
-1.2
-0.1
+0.1
aphid
library passed through aphids in food, 72 hours
-0.7
-0.5
-0.4
+0.7
-0.0
carbon source
L-Malic (C)
+0.8
-0.5
-0.8
-0.1
-0.2
stress
KB with Strychnine Sulfate 10 mM
+0.4
+0.0
-1.4
+0.4
-0.1
stress
KB with Myricetin 10 mM
+0.4
-0.0
-1.4
+0.5
-0.1
stress
KB with Piperic 10 mM
+0.8
-0.1
-0.7
-0.5
+0.1
in planta
epiphytic; Lima bean
-1.2
+0.2
+1.4
-0.4
-0.2
in planta
apoplastic; Pepper
+1.0
-0.3
+0.2
-0.8
-0.3
stress
KB with Brucine 10 mM
+0.6
+0.2
-0.9
+0.5
-0.2
in planta
apoplastic; Green bean; 13 days
-0.9
-0.2
+0.4
+0.8
+0.2
stress
KB with Methanol 5 vol%
+0.3
-0.1
-0.9
+0.7
+0.4
in planta
Green bean; epiphytic
+0.8
+0.1
+0.8
-0.4
-0.2
stress
KB with Novobiocin 250 ug/ml
-0.6
+0.7
+0.6
+0.3
+0.4
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