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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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500 nt
PfGW456L13_5156 and PfGW456L13_5157 are separated by 81 nucleotides
PfGW456L13_5157 and PfGW456L13_2 are separated by 589 nucleotides
PfGW456L13_2 and PfGW456L13_3 are separated by 177 nucleotides
PfGW456L13_3 and PfGW456L13_4 are separated by 138 nucleotides
PfGW456L13_5156 - tRNA-Ile-GAT, at 3,573 to 3,646
_5156
PfGW456L13_5157 - Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA, at 3,728 to 5,256
_5157
PfGW456L13_2 - Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27), at 5,846 to 7,339
_2
PfGW456L13_3 - Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18), at 7,517 to 8,866
_3
PfGW456L13_4 - LysR family transcriptional regulator PA0133, at 9,005 to 9,925
_4
Group
Condition
PfGW456L13
_5156
PfGW456L13
_5157
PfGW456L13
_2
PfGW456L13
_3
PfGW456L13
_4
nitrogen source
Uridine (N)
N.D.
N.D.
-1.3
-2.7
-2.1
nitrogen source
Cytosine (N)
N.D.
N.D.
-0.7
-1.0
-0.8
carbon source
octanoate (C)
N.D.
N.D.
-1.1
-0.2
-1.0
carbon source
L-Tryptophan (C)
N.D.
N.D.
-0.5
-0.3
-0.0
carbon source
D-Glucosamine Hydrochloride (C)
N.D.
N.D.
-0.5
-0.0
+0.0
carbon source
L-Tryptophan (C)
N.D.
N.D.
-0.2
-0.2
-0.1
lb
LB
N.D.
N.D.
-0.2
-0.2
-0.1
stress
Bacitracin 1 mg/ml
N.D.
N.D.
-0.0
-0.1
-0.3
carbon source
L-Valine (C)
N.D.
N.D.
-0.3
-0.0
-0.1
carbon source
L-Valine (C)
N.D.
N.D.
-0.3
+0.0
-0.1
stress
Lomefloxacin 0.0004 mM
N.D.
N.D.
+0.1
-0.1
-0.3
carbon source
D-Mannose (C)
N.D.
N.D.
-0.2
-0.2
+0.1
carbon source
L-Arabinose (C)
N.D.
N.D.
+0.0
-0.4
+0.1
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
N.D.
N.D.
-0.1
-0.3
+0.2
carbon source
L-Arabinose (C)
N.D.
N.D.
+0.2
-0.2
-0.1
carbon source
D-Gluconic Acid (C)
N.D.
N.D.
-0.1
-0.2
+0.3
carbon source
L-Lactate (C)
N.D.
N.D.
+0.2
-0.1
-0.1
carbon source
a-Ketoglutaric (C)
N.D.
N.D.
+0.2
-0.2
+0.1
carbon source
L-Histidine (C)
N.D.
N.D.
-0.1
-0.0
+0.3
carbon source
D-Glucose (C)
N.D.
N.D.
+0.1
-0.1
+0.3
carbon source
L-Glutamine (C)
N.D.
N.D.
-0.1
+0.3
+0.1
carbon source
D-Gluconic Acid (C)
N.D.
N.D.
+0.1
-0.2
+0.4
carbon source
D-Serine (C)
N.D.
N.D.
-0.0
+0.1
+0.2
nitrogen source
L-Glutamic (N)
N.D.
N.D.
+0.2
-0.0
+0.1
nitrogen source
L-Proline (N)
N.D.
N.D.
+0.2
+0.1
+0.2
carbon source
succinate (C)
N.D.
N.D.
-0.1
+0.2
+0.3
carbon source
Putrescine (C)
N.D.
N.D.
+0.2
+0.2
+0.2
carbon source
D-Lactate (C)
N.D.
N.D.
+0.1
+0.3
+0.2
nitrogen source
L-Valine (N)
N.D.
N.D.
+0.1
+0.2
+0.3
carbon source
L-Malic (C)
N.D.
N.D.
+0.0
+0.2
+0.3
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