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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_1136 and PfGW456L13_1137 overlap by 4 nucleotides
PfGW456L13_1137 and PfGW456L13_1138 are separated by 301 nucleotides
PfGW456L13_1138 and PfGW456L13_1139 are separated by 110 nucleotides
PfGW456L13_1139 and PfGW456L13_1140 are separated by 579 nucleotides
PfGW456L13_1136 - DNA polymerase III epsilon subunit (EC 2.7.7.7), at 1,262,585 to 1,263,292
_1136
PfGW456L13_1137 - Predicted signal-transduction protein containing cAMP-binding and CBS domains, at 1,263,289 to 1,265,181
_1137
PfGW456L13_1138 - response regulator, at 1,265,483 to 1,265,929
_1138
PfGW456L13_1139 - Malate synthase G (EC 2.3.3.9), at 1,266,040 to 1,268,217
_1139
PfGW456L13_1140 - Glycine cleavage system transcriptional antiactivator GcvR, at 1,268,797 to 1,269,315
_1140
Group
Condition
PfGW456L13
_1136
PfGW456L13
_1137
PfGW456L13
_1138
PfGW456L13
_1139
PfGW456L13
_1140
carbon source
octanoate (C)
-0.0
-0.1
-0.6
-3.3
-2.2
carbon source
D-Mannose (C)
-0.3
-0.3
+0.0
-4.8
-0.6
carbon source
L-Malic (C)
-0.3
+0.5
-0.2
-1.7
-3.2
carbon source
D-Mannose (C)
+0.3
+0.1
-0.6
-4.4
+0.2
carbon source
L-Arabinose (C)
-0.0
+0.3
-1.0
-4.3
+1.0
carbon source
Tween 20 (C)
+0.0
+0.2
+0.0
-4.6
+0.5
carbon source
L-Valine (C)
-0.3
-0.0
-0.4
-3.7
+0.6
carbon source
L-Histidine (C)
+0.1
+0.1
-0.6
-3.3
-0.1
carbon source
Glycerol (C)
-0.6
+0.0
-0.5
-0.6
-1.9
carbon source
L-Tryptophan (C)
-0.9
+0.5
-1.2
-1.4
-0.3
carbon source
L-Tryptophan (C)
-0.3
-0.2
-1.2
-1.7
+0.1
carbon source
L-Valine (C)
-0.3
+0.0
+0.3
-3.1
-0.2
carbon source
L-Phenylalanine (C)
-0.0
+0.1
-0.2
-3.5
+0.6
carbon source
L-Arabinose (C)
+0.5
+0.3
-0.3
-4.1
+0.8
carbon source
a-Ketoglutaric (C)
+0.0
-0.7
+0.3
-0.1
-2.2
carbon source
Trisodium citrate (C)
-0.2
+0.2
-0.1
-3.0
+0.5
carbon source
L-Phenylalanine (C)
-0.4
+0.2
-0.1
-3.1
+0.7
carbon source
D-Glucosamine Hydrochloride (C)
+0.3
+0.2
-0.2
-2.1
-0.8
carbon source
Putrescine (C)
-0.4
-0.2
+0.3
-2.9
+0.6
carbon source
L-Histidine (C)
-0.6
-0.0
+0.3
-1.5
-0.3
carbon source
D-Fructose (C)
-0.4
+0.1
-1.7
-1.9
+1.7
carbon source
D-Glucosamine Hydrochloride (C)
-0.1
+0.0
-0.7
-2.3
+1.1
carbon source
L-Alanine (C)
-0.6
-0.0
+0.3
+0.1
-1.2
nitrogen source
Gly-DL-Asp (N)
+0.5
-0.0
-0.2
-1.0
-0.6
carbon source
D-Galactose (C)
-0.6
+0.2
-0.9
-0.4
+0.3
carbon source
D-Fructose (C)
-0.1
-0.4
+0.2
-1.2
+1.3
carbon source
D-Galactose (C)
-0.6
+0.3
-0.1
-0.7
+1.1
carbon source
L-Lactate (C)
-0.0
-0.1
-0.8
+0.1
+2.1
carbon source
a-Ketoglutaric (C)
+0.1
+0.3
+0.8
-0.2
+0.9
carbon source
D,L-Lactate (C)
+0.2
+0.1
+0.8
+0.1
+1.4
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