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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_1038 and PfGW456L13_1039 overlap by 4 nucleotides
PfGW456L13_1039 and PfGW456L13_1040 are separated by 109 nucleotides
PfGW456L13_1040 and PfGW456L13_1041 are separated by 27 nucleotides
PfGW456L13_1041 and PfGW456L13_1042 are separated by 29 nucleotides
PfGW456L13_1038 - COG1272: Predicted membrane protein hemolysin III homolog, at 1,151,175 to 1,151,792
_1038
PfGW456L13_1039 - Transcriptional regulator, LysR family, at 1,151,789 to 1,152,706
_1039
PfGW456L13_1040 - D-amino acid dehydrogenase small subunit (EC 1.4.99.1), at 1,152,816 to 1,154,057
_1040
PfGW456L13_1041 - Putative translation initiation inhibitor, yjgF family, at 1,154,085 to 1,154,435
_1041
PfGW456L13_1042 - Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4), at 1,154,465 to 1,155,367
_1042
Group
Condition
PfGW456L13
_1038
PfGW456L13
_1039
PfGW456L13
_1040
PfGW456L13
_1041
PfGW456L13
_1042
carbon source
succinate (C)
-0.3
-0.7
-0.3
-1.7
-0.2
carbon source
D-Galactose (C)
+0.1
-0.1
-0.3
-2.8
-0.1
carbon source
D-Glucosamine Hydrochloride (C)
+0.1
-0.3
+0.1
-2.4
-0.2
stress
Aluminum chloride 2.5 mM
-0.2
-0.0
+0.2
-1.8
+0.0
carbon source
Putrescine (C)
+0.1
-0.8
-0.3
-0.2
-0.2
stress
Paraquat dichloride 0.032 mg/ml
-0.1
-0.3
-0.0
-0.8
-0.0
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
-0.4
+0.0
-0.1
-0.9
+0.1
carbon source
Trisodium citrate (C)
-0.2
+0.4
-0.3
-0.9
-0.1
stress
Dimethyl Sulfoxide 7.5 vol%
+0.0
-0.2
+0.1
-1.1
+0.0
carbon source
L-Malic (C)
-0.1
-0.7
-0.0
+0.4
-0.1
control
LB
+0.0
+0.5
+0.0
-0.9
-0.0
carbon source
L-Glutamine (C)
-0.2
-0.4
-0.3
+0.6
-0.2
carbon source
octanoate (C)
-0.2
-0.4
-0.4
+1.2
-0.2
carbon source
D-Lactate (C)
-0.3
+0.1
-0.2
+0.8
+0.1
carbon source
Glycerol (C)
-0.3
+0.3
-0.2
+0.8
+0.0
carbon source
D,L-Lactate (C)
+0.0
+0.1
-0.4
+1.1
-0.1
carbon source
Tween 20 (C)
+0.2
-0.2
+0.1
+0.7
-0.1
control
LB control
-0.0
+0.3
-0.1
+0.6
+0.1
carbon source
a-Ketoglutaric (C)
+0.2
+0.9
+0.0
+0.1
-0.2
carbon source
L-Arabinose (C)
+0.1
+0.8
+0.1
-0.2
+0.2
nitrogen source
Gly-Glu (N)
+0.0
+0.1
-0.2
+1.0
+0.1
carbon source
L-Lactate (C)
+0.4
-0.5
+0.1
+1.2
-0.1
carbon source
L-Malic (C)
+0.4
-0.0
+0.1
+1.0
-0.3
carbon source
D-Fructose (C)
+0.3
-0.2
-0.3
+1.3
+0.1
stress
Fusidic 0.08 mg/ml
-0.1
+0.3
+0.1
+0.8
+0.1
stress
Aluminum chloride 5 mM
+0.4
+0.3
+0.1
+0.5
+0.0
carbon source
D-Fructose (C)
+0.1
+0.8
-0.2
+0.8
-0.0
carbon source
D-Galactose (C)
-0.1
+0.5
+0.2
+1.1
+0.2
carbon source
D-Serine (C)
-0.1
-0.2
+1.1
+3.0
-0.1
carbon source
D-Serine (C)
+0.2
+0.0
+0.8
+2.6
+0.1
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