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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_4748 and Pf6N2E2_4749 are separated by 239 nucleotides
Pf6N2E2_4749 and Pf6N2E2_4750 are separated by 32 nucleotides
Pf6N2E2_4750 and Pf6N2E2_4751 are separated by 252 nucleotides
Pf6N2E2_4751 and Pf6N2E2_4752 are separated by 228 nucleotides
Pf6N2E2_4748 - RNA polymerase sigma-70 factor, ECF subfamily, at 5,484,575 to 5,485,024
_4748
Pf6N2E2_4749 - DNA polymerase III epsilon subunit (EC 2.7.7.7), at 5,485,264 to 5,485,935
_4749
Pf6N2E2_4750 - Predicted signal-transduction protein containing cAMP-binding and CBS domains, at 5,485,968 to 5,487,908
_4750
Pf6N2E2_4751 - response regulator, at 5,488,161 to 5,488,607
_4751
Pf6N2E2_4752 - Malate synthase G (EC 2.3.3.9), at 5,488,836 to 5,491,013
_4752
Group
Condition
Pf6N2E2
_4748
Pf6N2E2
_4749
Pf6N2E2
_4750
Pf6N2E2
_4751
Pf6N2E2
_4752
carbon source
L-Leucine (C)
-0.2
-0.7
+0.0
-0.4
-4.6
carbon source
L-Isoleucine (C)
-0.1
-0.2
+0.1
-0.3
-5.4
carbon source
Tween 20 (C)
-0.1
-0.4
-0.1
-0.1
-4.4
carbon source
Tween 20 (C)
-0.2
-0.2
+0.0
+0.2
-5.0
carbon source
Carnitine Hydrochloride (C)
-0.0
-0.3
+0.0
-0.3
-4.5
carbon source
L-Leucine (C)
+0.0
-0.5
-0.1
-0.2
-4.2
carbon source
L-Phenylalanine (C)
-0.1
-1.0
+0.1
-0.1
-4.0
carbon source
octanoate (C)
-0.0
-0.7
+0.2
-0.1
-4.2
carbon source
Carnitine Hydrochloride (C)
-0.0
+0.1
+0.0
-0.2
-4.7
carbon source
L-Isoleucine (C)
-0.1
+0.0
+0.0
+0.1
-4.6
carbon source
L-Arabinose (C)
+0.1
+0.0
+0.1
-0.1
-4.6
carbon source
m-Inositol (C)
+0.2
+0.1
-0.0
+0.1
-4.7
carbon source
L-Arabinose (C)
-0.1
+0.1
-0.1
-0.2
-3.8
carbon source
D-Glucosamine Hydrochloride (C)
-0.1
-1.2
-0.1
-0.3
-2.5
carbon source
D-Xylose (C)
-0.1
-1.0
-0.1
+0.5
-3.3
carbon source
L-Phenylalanine (C)
-0.1
+0.1
+0.0
-0.0
-4.0
carbon source
m-Inositol (C)
-0.4
-0.3
-0.1
+0.1
-3.2
carbon source
octanoate (C)
-0.1
+0.2
+0.1
+0.3
-4.2
carbon source
D-Mannose (C)
-0.1
-0.6
-0.1
-0.1
-2.7
carbon source
Putrescine (C)
+0.0
-0.6
-0.0
-0.8
-2.2
carbon source
L-Leucine (C)
-0.0
-0.1
-0.0
-0.3
-3.0
carbon source
L-Leucine (C)
+0.1
-0.5
+0.2
-0.3
-2.8
carbon source
D-Mannose (C)
-0.3
-0.9
-0.0
-0.1
-2.0
carbon source
D-Xylose (C)
-0.3
-0.4
-0.2
+0.4
-2.7
carbon source
D-Glucosamine Hydrochloride (C)
-0.3
-0.1
-0.1
+0.2
-2.9
carbon source
Ying_Others16 rep B; time point 3
+0.0
+0.4
+0.1
-1.1
-1.9
carbon source
D-Alanine (C)
+0.0
-0.2
-0.1
+0.3
-2.5
nitrogen source
nitrogen source nitrite 5mM
-0.3
-1.8
-0.3
+0.4
-0.3
carbon source
Ying_Others16 rep B; time point 2
-0.3
-0.6
-0.0
+0.5
-1.9
carbon source
Ying_Others16 rep A; time point 2
-0.1
-0.6
+0.1
+0.4
-1.9
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