Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_3129 and Pf6N2E2_3130 are separated by 25 nucleotidesPf6N2E2_3130 and Pf6N2E2_3131 are separated by 72 nucleotidesPf6N2E2_3131 and Pf6N2E2_3132 are separated by 146 nucleotidesPf6N2E2_3132 and Pf6N2E2_3133 overlap by 38 nucleotides Pf6N2E2_3129 - Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1), at 3,620,673 to 3,621,620 _3129 Pf6N2E2_3130 - Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1), at 3,621,646 to 3,622,428 _3130 Pf6N2E2_3131 - 4-aminobutyraldehyde dehydrogenase (EC 1.2.1.19), at 3,622,501 to 3,623,925 _3131 Pf6N2E2_3132 - FIG00954548: hypothetical protein, at 3,624,072 to 3,624,335 _3132 Pf6N2E2_3133 - Death on curing protein, Doc toxin, at 3,624,298 to 3,624,597 _3133
Group Condition Pf6N2E2_3129 Pf6N2E2_3130 Pf6N2E2_3131 Pf6N2E2_3132 Pf6N2E2_3133
stress Magnesium chloride 0.125 M +0.1 -0.8 -0.0 -2.7 N.D.
motility inner cut, LB soft agar motility assay -0.4 -1.0 -0.1 -1.1 N.D.
motility outer cut, LB soft agar motility assay +0.0 -1.1 -0.2 -1.2 N.D.
stress copper (II) chloride 3 mM -0.2 -0.7 -0.0 -1.5 N.D.
stress deoxycholate 0.0125 M +0.2 -0.4 -0.1 -2.0 N.D.
carbon source D-Glucosamine Hydrochloride (C) -0.1 -0.6 -0.0 -1.6 N.D.
denitrifying Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A +0.1 -0.4 +0.0 -1.9 N.D.
nitrogen source nitrogen source nitrate 5mM +0.1 -0.4 -0.1 -1.8 N.D.
carbon source D-Fructose (C) -0.1 -0.7 +0.0 -1.4 N.D.
nitrogen source L-Serine (N) +0.4 -0.5 -0.2 -1.8 N.D.
nitrogen source nitrogen source nitrite 5mM -0.0 -0.1 -0.0 -1.9 N.D.
nitrogen source nitrogen source nitrite 1mM +0.1 +0.1 -0.1 -2.0 N.D.
nitrogen source L-Lysine (N) -0.1 +0.1 -0.2 -1.6 N.D.
denitrifying Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate B -0.2 -0.2 +0.1 -1.3 N.D.
nitrogen source L-Glutamine (N) +0.1 -0.7 +0.1 -1.1 N.D.
nitrogen source Cytosine (N) -0.2 +0.3 -0.1 -1.6 N.D.
carbon source D-Xylose (C) +0.2 -0.3 -0.1 -1.2 N.D.
stress RCH2 defined with Cobalt chloride 0.04 mM +0.2 +0.4 -0.2 -2.0 N.D.
carbon source RCH2_defined +0.1 +0.0 +0.2 -1.6 N.D.
stress RCH2 defined with Zinc 0.032 mM +0.0 +0.3 -0.1 -1.4 N.D.
carbon source octanoate (C) +0.2 +0.3 -0.4 -1.2 N.D.
vitamin No vitamins t1 +0.2 +0.1 +0.0 -1.5 N.D.
stress RCH2 defined with copper (II) chloride 0.03 mM +0.2 +0.6 +0.0 -1.7 N.D.
nitrogen source nitrogen source nitrate 5mM -0.1 +0.6 +0.1 -1.1 N.D.
carbon source Carbon source D-Glucose 10 mM +0.2 +1.0 -0.2 -1.3 N.D.
carbon source octanoate (C) +0.2 +0.5 +0.2 -1.1 N.D.
carbon source propionate (C) +0.3 +0.6 -0.2 -0.7 N.D.
nitrogen source L-Aspartic Acid (N) +0.0 +0.9 -0.0 -0.9 N.D.
stress RCH2 defined with Cobalt chloride 0.04 mM +0.2 +0.7 +0.1 -0.7 N.D.
carbon source Ying_sugar7 rep C; time point 2 -0.2 -0.4 -0.0 +1.2 N.D.
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