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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_2155 and Pf6N2E2_2156 are separated by 59 nucleotides
Pf6N2E2_2156 and Pf6N2E2_2157 are separated by 76 nucleotides
Pf6N2E2_2157 and Pf6N2E2_2158 are separated by 138 nucleotides
Pf6N2E2_2158 and Pf6N2E2_2159 are separated by 33 nucleotides
Pf6N2E2_2155 - hypothetical protein, at 2,560,353 to 2,560,637
_2155
Pf6N2E2_2156 - Putative polyketide synthase (Fragment), at 2,560,697 to 2,561,365
_2156
Pf6N2E2_2157 - Transcriptional regulator, at 2,561,442 to 2,562,371
_2157
Pf6N2E2_2158 - Signal transduction histidine kinase, at 2,562,510 to 2,563,097
_2158
Pf6N2E2_2159 - phospholipase/carboxylesterase family protein, at 2,563,131 to 2,563,847
_2159
Group
Condition
Pf6N2E2
_2155
Pf6N2E2
_2156
Pf6N2E2
_2157
Pf6N2E2
_2158
Pf6N2E2
_2159
stress
Hydroxylamine 0.5 M
-0.3
-2.1
-0.5
-0.2
+0.5
stress
deoxycholate 0.0125 M
+0.4
-0.8
-1.1
-0.8
-0.3
lb
LB no stress 48 hours
+0.2
-2.3
+0.1
-0.2
+0.2
stress
molybdate 0.25 M
-0.6
-1.1
+0.4
-0.4
-0.1
stress
thiosulfate 0.25 M
+0.1
-0.9
-0.4
-0.4
+0.1
lb
LB
-0.1
-1.3
+0.2
-0.1
-0.1
stress
Chlorite 0.08 mM
-0.3
-1.3
+0.1
+0.2
-0.0
stress
Cobalt chloride 0.6 mM
+0.3
-0.2
-0.6
-0.6
-0.3
nitrogen source
Gly-Glu (N)
-0.3
-0.6
+0.4
-0.6
-0.2
stress
Aluminum chloride 0.00005 M
+0.3
-1.1
+0.1
-0.5
-0.0
carbon source
D-Mannose (C)
-0.2
-1.6
+0.1
+0.3
+0.2
stress
DEANONOate 0.000625 M
-0.0
-0.6
+0.2
-0.8
-0.0
carbon source
Carnitine Hydrochloride (C)
-0.2
-1.0
+0.0
+0.3
-0.3
stress
Cobalt chloride 0.4 mM
+0.5
-0.9
-0.5
-0.1
-0.1
carbon source
pyruvate (C)
-0.2
-1.1
+0.2
+0.1
-0.1
stress
RCH2 defined with Nickel (II) chloride 0.04 mM
+0.4
-1.3
-0.1
-0.4
+0.3
carbon source
D-Glucose (C)
-1.1
+0.2
-0.1
+0.1
-0.3
lb
LB no stress 48 hours
+0.8
-1.2
-0.3
-0.3
+0.1
nitrogen source
L-Serine (N)
+0.4
-0.5
-0.0
-0.6
-0.2
motility
outer cut, LB soft agar motility assay
+0.4
-1.4
-0.2
+0.4
-0.0
stress
Magnesium chloride 0.125 M
+0.3
-0.9
-0.3
+0.2
-0.1
carbon source
Ying_AminoAcid20 rep C; time point 3
-1.2
+0.3
+0.2
+0.0
+0.0
carbon source
Trisodium citrate (C)
-0.3
-0.9
+0.3
+0.2
+0.0
stress
Cobalt chloride 0.6 mM
+0.5
+0.4
-0.2
-0.8
-0.4
lb
LB no stress 48 hours
-0.1
-1.1
+0.3
+0.5
+0.0
stress
Zinc chloride 0.0000015625 M
+0.7
-0.9
+0.7
-0.3
+0.0
nitrogen source
nitrogen source nitrate 20mM
-0.1
+1.3
-0.3
-0.3
-0.2
stress
DEANONOate 0.000625 M
-0.4
+0.2
+0.7
-0.2
+0.2
stress
thiosulfate 0.25 M
-0.3
+0.8
-0.1
+0.4
-0.5
stress
Chloride 500 mM
-0.1
+0.7
-0.2
+0.6
-0.0
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