Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4657	PP_4658	PP_4659	PP_4660	PP_4661
nitrogen source	Urea (N)	-0.5	-0.1	+0.1	-2.0	-0.1
carbon source	D-Glucose (C)	-0.5	-0.2	-0.1	-1.1	-0.2
carbon source	Crotonic (C)	-0.9	-0.1	-0.0	-1.0	+0.0
phage	P. put South MOI 10	-0.1	-0.2	-0.0	-1.4	-0.3
nitrogen source	Urea (N); with MOPS	-0.4	+0.0	-0.2	-1.3	-0.2
carbon source	ferulate (C); with MOPS	-0.1	+0.0	-0.1	-1.5	-0.2
stress	MOPS minimal media_Glucose20mM with PHB-HV-HH 0.1 mg/mL	-0.2	+0.0	-0.1	-1.6	+0.1
temperature	Growth at 25C; with MOPS	-0.0	-0.1	+0.0	-1.3	-0.3
stress	Growth with Chloride 200 mM	-0.2	-0.0	+0.1	-1.6	-0.0
nitrogen source	Urea (N)	-0.1	-0.5	+0.1	-1.4	+0.2
nitrogen source	nitrate (N)	-0.8	-0.5	-0.0	-0.7	+0.2
stress	Growth with Chloride 500 mM; with MOPS	+0.0	+0.1	-0.0	-1.6	-0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	-0.2	-0.3	-1.2	+0.3
carbon source	2-Methylbutanoic (C)	-0.2	+0.0	-0.0	-1.6	+0.3
nitrogen source	NAG (N); with MOPS	-0.5	-0.0	-0.1	-1.1	+0.3
nitrogen source	Ammonium chloride (N); with MOPS	-0.7	-0.2	-0.0	-0.4	+0.4
carbon source	ferulate (C); with MOPS	+0.1	+0.1	+0.1	-1.4	+0.1
carbon source	ferulate (C); with MOPS	-0.5	+0.3	+0.2	-0.7	+0.0
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	-0.1	+0.3	-1.0	+0.1
pH	Growth at pH6 and (C) D-Glucose	-0.7	-0.4	+0.1	+0.1	+0.5
nitrogen source	D-2-Aminobutyric (N)	-1.1	+0.0	-0.0	+0.4	+0.3
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay	+0.6	+0.2	-0.2	-0.7	-0.1
carbon source	carbon source Bisabolene 48.9 mM	-0.6	-0.2	+0.1	+0.8	+0.2
carbon source	carbon source 4-vinylphenol 0.01 mM	+0.0	-0.3	-0.0	+1.2	-0.3
carbon source	Octanoic (C)	-0.3	-0.0	+0.2	+1.0	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.2	-0.2	-0.2	+1.0	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.5	+0.1	-0.3	+1.1	-0.6
pH	pH 5	-0.0	-0.2	+0.2	+1.1	-0.2
pH	pH 8	+0.1	-0.3	+0.1	+1.3	+0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.1	+0.4	-0.0	+0.7	+0.4