Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4145	PP_4146	PP_4147	PP_4148	PP_4149
nitrogen source	Ammonium chloride and TNT (N)	-0.2	-0.6	-1.1	-1.3	-1.0
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.0	-0.2	-1.1	-1.1	-1.4
nitrogen source	Ammonium chloride and TNT (N)	-0.2	-0.5	-0.9	-1.1	-0.9
nitrogen source	Ammonium chloride and TNT (N)	-0.1	-0.4	-0.8	-1.2	-0.8
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.2	-0.3	-0.9	-1.1	-0.7
nitrogen source	Ammonium chloride and TNT (N)	-0.2	-0.4	-0.6	-1.1	-0.9
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.1	-0.2	-1.0	-0.9	-1.1
carbon source	DL-2-Aminoadipic 10 mM (C)	-0.4	-0.3	-0.7	-0.7	-0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	-0.3	-1.0	-0.6	-0.4
nitrogen source	TNT (N)	-0.2	-0.2	-0.6	-0.6	-0.5
carbon source	Ethyl decanoate (C)	-0.3	+0.0	-0.4	-0.7	-0.7
carbon source	3-methyl-3-buten-1-ol 0.1 vol% (C)	-0.0	-0.0	-0.7	-0.7	-0.7
nitrogen source	TNT (N)	-0.1	-0.4	-0.5	-0.7	-0.4
nitrogen source	TNT (N)	-0.1	-0.2	-0.6	-0.8	-0.4
carbon source	Butyl stearate (C)	-0.4	+0.0	-0.5	-0.6	-0.7
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.0	-0.2	-0.6	-0.6	-0.6
micoeukaryotes	Acanthamoeba sp., muxed culture-2	+0.0	-0.4	-0.6	-0.3	-0.6
carbon source	1,3-Hexanediol (C)	-0.2	+0.1	-0.8	-0.5	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+0.3	-0.5	-0.5	-0.7
carbon source	ferulate (C); with MOPS	-0.1	+0.3	-0.1	-1.2	-0.5
pH	pH 9	-0.3	-0.1	-0.5	+0.5	-0.6
phage	PUT8 MOI 0.1	-0.5	+0.1	+0.7	+0.4	+0.4
phage	PUT8 MOI 0.1	-0.4	+0.1	+0.6	+0.1	+0.8
phage	P. putida South MOI 10	-0.1	+0.1	+0.6	+0.6	+0.5
carbon source	Hexanoic (C)	-0.1	+0.2	+0.7	+0.7	+0.7
carbon source	Hexanoic (C)	+0.1	+0.1	+1.0	+0.9	+0.8
carbon source	Delta-Decalactone (C)	-0.1	-0.0	+1.0	+0.9	+1.2
carbon source	Delta-Decalactone (C)	-0.0	+0.2	+1.4	+1.1	+1.1
carbon source	Decanoic (C)	-0.1	+0.9	+1.0	+1.4	+1.2
carbon source	Delta-Nonalactone (C)	+0.3	+0.3	+2.5	+1.9	+2.4