Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3667	PP_3668	PP_3669	PP_3670	PP_3671
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	-0.4	-0.5	+0.4	-0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.3	-0.3	-0.2	-0.4	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.3	-1.0	-0.3	+0.4	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.3	-0.4	-0.2	-0.1	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.0	-1.5	-0.2	+0.5	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.1	-1.2	-0.1	+0.1	-0.2
phage	PUT8 MOI 0.1	-0.3	-0.1	-0.1	-0.7	-0.2
carbon source	carbon source D-Glucose 55.5 mM	-0.2	+0.1	-0.1	-0.3	-0.8
nitrogen source	D-2-Aminobutyric (N)	-0.1	+0.2	-0.2	-0.0	-1.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.0	-0.3	-0.4	-0.8	+0.3
pH	Growth at pH7 and (C) D-Glucose	+0.1	-0.0	-0.1	-0.8	-0.4
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM	-0.1	+0.3	-0.0	-0.3	-0.9
carbon source	carbon source Bisabolene 48.9 mM	-0.1	-0.4	+0.2	-0.1	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.2	-1.0	+0.0	-0.1	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.1	-0.5	-0.3	+0.2	-0.3
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-0.2	-1.0	+0.6	-0.0	+0.1
pH	Growth at pH7 and (C) D-Glucose	+0.3	+0.2	-0.4	+0.1	-0.8
pH	pH 8	-0.4	+0.0	+0.4	-0.3	-0.3
carbon source	L-Lysine (C)	-0.4	+0.0	-0.1	+0.4	-0.4
carbon source	Tween 20 (C)	-0.1	-0.3	-0.2	+0.5	-0.3
pH	Valerolactone (C) pH 6.5	-0.2	+0.2	-0.5	+0.3	-0.3
nitrogen source	NAG (N); with MOPS	+0.5	-0.7	+0.1	+0.1	+0.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+0.4	-0.3	+0.5	-0.6
nitrogen source	Urea (N); with MOPS	+0.4	-0.0	+0.2	+0.2	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.3	+0.1	-0.1	+0.5	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	+0.2	-0.3	-0.0	+0.2	+0.5
no stress control	Growth with no stress	+0.5	+0.2	+0.1	-0.3	+0.3
pH	Growth at pH7 and (C) Trisodium citrate	+0.4	+0.4	+0.1	+0.1	+0.4
nitrogen source	nitrogen source nitrite 1mM	+0.1	+0.1	+0.2	+0.2	+1.0
carbon source	ferulate (C); with MOPS	+0.2	+0.3	+0.4	+0.5	+0.7