Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_2457 and PP_2458 are separated by 15 nucleotidesPP_2458 and PP_2459 overlap by 4 nucleotidesPP_2459 and PP_2460 are separated by 97 nucleotidesPP_2460 and PP_2461 overlap by 29 nucleotides PP_2457: PP_2457 - DNA-binding transcriptional repressor, at 2,804,188 to 2,805,210 _2457 PP_2458: PP_2458 - ribokinase, at 2,805,226 to 2,806,134 _2458 PP_2459: PP_2459 - ribose pyranase, at 2,806,131 to 2,806,529 _2459 PP_2460: PP_2460 - ribonucleoside hydrolase, at 2,806,627 to 2,807,595 _2460 PP_2461: PP_2461 - conserved protein of unknown function, at 2,807,567 to 2,807,779 _2461
Group Condition PP_2457 PP_2458 PP_2459 PP_2460 PP_2461
nitrogen source NAG (N); with MOPS -0.5 +0.1 -7.3 -0.3 N.D.
phage P. putida Sci small MOI 0.1 -0.0 -0.1 -2.8 +0.1 N.D.
stress Growth with Chloride 200 mM +0.1 -0.2 -2.5 -0.0 N.D.
r2a control with 0.2x vogels R2A control with 0.2X Vogels -0.1 -0.1 -2.4 +0.0 N.D.
temperature Growth at 25C -0.4 -0.2 -1.6 -0.0 N.D.
phage P. putida South MOI 10 +0.4 -0.1 -2.1 -0.0 N.D.
pH Growth at pH6 and (C) D-Glucose +0.2 -0.3 -1.2 +0.4 N.D.
carbon source L-Leucine (C) +0.3 +0.4 -1.2 -0.3 N.D.
pH Growth at pH6 and (C) D-Glucose +0.3 -0.3 -1.1 +0.4 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs +0.5 +0.3 -1.1 -0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.9 -0.2 +1.0 +0.2 N.D.
nitrogen source nitrogen source nitrite 1mM -0.1 -0.0 +1.4 -0.7 N.D.
carbon source Delta-Nonalactone (C) +0.1 +0.8 +0.4 -0.6 N.D.
pH pH 7 +0.7 +0.6 -0.6 +0.1 N.D.
carbon source 2,3-Butanediol (C) -0.3 +0.4 +1.0 -0.3 N.D.
carbon source Delta-Decalactone (C) +0.2 +0.8 +0.8 -0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 +0.6 +1.1 +0.0 N.D.
carbon source Delta-Decalactone (C) +0.5 +0.7 +0.5 -0.2 N.D.
carbon source 4-Hydroxyvalerate (C) (40mM) +1.1 +0.7 -0.0 -0.2 N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 -0.0 +1.6 -0.2 N.D.
nitrogen source Propandiamine (N) +0.1 +0.3 +1.7 -0.1 N.D.
carbon source Valerolactone (C) +1.0 +0.5 +0.8 -0.1 N.D.
carbon source L-Valine (C) +1.0 +0.6 +0.6 +0.0 N.D.
carbon source L-Valine (C) +1.2 +0.6 +0.5 +0.1 N.D.
nitrogen source 2,6-diaminopimelic (N) +0.1 +0.6 +1.5 +0.3 N.D.
nitrogen source D-2-Aminobutyric (N) +0.9 +0.3 +0.7 +0.6 N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.9 +0.5 +0.4 -0.2 N.D.
nitrogen source D-2-Aminobutyric (N) +0.8 +0.5 +1.1 +0.7 N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +3.4 +0.1 +0.5 +0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +3.4 +0.6 +0.5 +0.1 N.D.
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