Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

Or view all 989 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PP_2041	PP_2042	PP_2043	PP_2044	PP_5499
carbon source	ferulate (C); with MOPS	+0.0	+0.1	+0.0	-4.7	-0.2
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.5	-0.4	+0.1	-4.1	+0.7
phage	P. putida Missley MOI 0.1	-1.4	-0.8	-0.5	+0.4	-1.5
phage	P. putida Sci small MOI 0.1	-0.8	-0.1	-1.0	-0.9	-0.4
phage	P. putida PUT 7 MOI 1	-1.0	-1.0	-0.6	-0.1	-0.4
nitrogen source	nitrogen source nitrite 1mM	-0.2	-0.0	+0.1	-1.6	-1.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.4	-0.0	-0.0	-2.0	-0.5
carbon source	D-Glucose (C); with MOPS	-0.6	-0.1	+0.2	-1.7	-0.6
carbon source	Valerolactone (C)	-0.6	+0.2	+0.1	-2.2	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.4	-0.4	+0.0	-1.5	-0.4
pH	Growth at pH8 and (C) D-Glucose	-0.1	-0.0	-0.2	-2.3	-0.1
carbon source	carbon source 3-O-methyl-glucose 50 mM	+0.1	-0.2	+0.2	-2.1	-0.5
phage	P. putida Sci Big MOI 0.1	-0.6	-0.4	-1.0	+0.8	-1.2
carbon source	D-Glucose (C)	+0.1	-0.2	-0.1	-1.9	-0.3
stress	MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL	-0.4	+0.3	-0.1	-1.3	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.2	+0.1	-0.2	-1.9	-0.2
pH	Growth at pH6 and (C) Trisodium citrate	-0.1	-0.2	+0.1	-2.0	+0.2
carbon source	acetate (C)	+0.1	-0.1	-0.2	+0.3	-2.1
pH	Growth at pH6 and (C) Trisodium citrate	+0.4	+0.0	-0.2	-1.8	-0.2
pH	pH 4	-0.6	+0.2	+0.3	-1.7	+0.0
carbon source	Delta-Nonalactone (C)	+0.5	-0.2	-0.3	-2.0	+0.4
carbon source	Valeric (C)	+0.4	+0.1	+0.1	-1.4	-0.7
pH	Growth at pH6 and (C) D-Glucose	-0.4	-0.2	+0.1	-1.6	+0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.4	+0.2	+0.1	-2.0	+0.0
nitrogen source	no extra (N); with MOPS	+0.1	-0.0	+0.1	-2.1	+0.7
carbon source	L-Leucine (C)	+0.2	+0.1	-0.0	-2.0	+0.5
microaerobic m9	microaerobic M9	+0.4	+0.1	+0.2	-1.8	+0.1
phage	P. putida South MOI 10	-0.2	-0.2	-0.3	+1.1	-0.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+0.0	-0.3	+2.3	-0.3
carbon source	L-Leucine (C)	-0.2	-0.0	-0.2	+1.4	+1.0