Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_1584	PP_5476	PP_1585	PP_1586	PP_1587
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.1	+0.0	N.D.	-0.2	-2.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.4	-0.7	N.D.	-0.5	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.3	-0.1	N.D.	-0.2	-1.8
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.3	+0.0	N.D.	-0.0	-1.9
carbon source	carbon source 4-vinylphenol 0.01 mM	-0.1	-1.1	N.D.	+0.1	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.6	-0.5	N.D.	-0.3	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.4	-0.3	N.D.	-1.2	-0.1
carbon source	D-Glucose (C)	+0.2	-0.7	N.D.	-0.6	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.4	-0.8	N.D.	-0.3	+0.2
pH	Growth at pH6 and (C) Trisodium citrate	-1.1	+0.6	N.D.	+0.0	+0.1
stress	Growth with Chloride 200 mM; with MOPS	+0.3	+0.1	N.D.	-1.0	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.5	-0.7	N.D.	-0.5	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.4	-0.7	N.D.	+0.8	-0.0
nitrogen source	nitrogen source nitrite 1mM	-0.3	-0.5	N.D.	+0.6	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.6	+0.2	N.D.	-0.4	+0.6
stress	Growth with Chloride 200 mM	+0.3	+0.3	N.D.	-0.9	+0.1
nitrogen source	2,6-diaminopimelic (N)	+0.6	+0.3	N.D.	-0.7	-0.0
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	+0.9	N.D.	-0.6	+0.2
phage	P. putida Sci small MOI 0.1	+0.9	+0.3	N.D.	-0.7	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.1	-0.6	N.D.	+0.4	-0.1
carbon source	D-Fructose (C)	+0.8	+0.4	N.D.	-0.3	+0.0
carbon source	Octanoic (C)	+1.0	+0.5	N.D.	-0.4	-0.2
carbon source	D-Glucose (C) 2.5 mM	+0.8	+0.8	N.D.	-0.4	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.2	+1.2	N.D.	+0.4	+0.0
carbon source	Lauric (C)	+0.9	+0.8	N.D.	-0.1	-0.1
phage	P. putida Missley MOI 0.1	-0.0	+0.1	N.D.	+0.7	+0.8
carbon source	3-methyl-1-butanol 0.25 vol% (C)	+0.3	+0.6	N.D.	+0.4	+0.3
carbon source	Valeric (C)	+1.0	+1.0	N.D.	-0.1	-0.2
carbon source	Myristic (C)	+1.2	+1.0	N.D.	-0.1	+0.0
carbon source	1,3-Butandiol (C)	+1.6	+1.1	N.D.	+0.0	-0.0