Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS21690 and PFLU_RS21695 are separated by 132 nucleotidesPFLU_RS21695 and PFLU_RS21700 are separated by 3 nucleotidesPFLU_RS21700 and PFLU_RS21705 are separated by 4 nucleotidesPFLU_RS21705 and PFLU_RS21710 are separated by 4 nucleotides PFLU_RS21690: PFLU_RS21690 - DNA-binding protein, at 4,888,003 to 4,888,215 _RS21690 PFLU_RS21695: PFLU_RS21695 - flagellar biosynthesis protein FlhB, at 4,888,348 to 4,889,484 _RS21695 PFLU_RS21700: PFLU_RS21700 - flagellar type III secretion system protein FliR, at 4,889,488 to 4,890,273 _RS21700 PFLU_RS21705: PFLU_RS21705 - flagellar biosynthesis protein FliQ, at 4,890,278 to 4,890,547 _RS21705 PFLU_RS21710: PFLU_RS21710 - flagellar type III secretion system pore protein FliP, at 4,890,552 to 4,891,295 _RS21710
Group Condition PFLU_RS21690 PFLU_RS21695 PFLU_RS21700 PFLU_RS21705 PFLU_RS21710
carbon source D,L-Malic Acid (C) -0.4 -4.0 -2.9 -3.7 -4.2
carbon source L-Malic (C) +0.0 -3.1 -2.6 -2.3 -3.3
carbon source trans-aconitic 5 mM (C) +0.1 -2.0 -2.3 -2.3 -2.0
carbon source Xanthosine (C) +0.4 -2.3 -2.2 -2.0 -1.8
carbon source 4-Guanidinobutyric 10 mM (C) +0.5 -1.8 -2.0 -2.2 -2.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -1.3 +2.3 +2.0 +2.0 +1.6
carbon source 4-Acetoxy-3-methoxycinnamic (C) -0.6 +2.0 +2.0 +1.9 +1.9
no stress control Glucose (C) and Betaine (N); with TAPS -0.7 +2.3 +1.9 +1.8 +2.1
carbon source p-Coumaric (C) 5 mM -1.2 +2.4 +2.5 +2.2 +2.4
no stress control Glucose (C) and Betaine (N); with MOPS -0.1 +2.3 +2.2 +2.2 +2.1
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.1 +2.1 +2.1 +2.2 +2.4
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.6 +2.2 +2.4 +2.2 +2.6
nitrogen source no extra (N); with MOPS -0.3 +2.7 +2.2 +2.2 +2.1
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.1 +2.0 +2.3 +2.2 +2.3
no stress control Glucose (C) and Betaine (N); with TAPS -0.5 +2.4 +2.2 +2.5 +2.3
no stress control Glucose (C) and Betaine (N); with TAPS -0.3 +2.5 +2.1 +2.4 +2.3
carbon source D-Glucose (C) 10 mM -0.4 +2.1 +2.6 +2.4 +2.6
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.2 +2.2 +2.2 +2.2 +2.5
carbon source D-Glucose (C) 10 mM +0.2 +1.9 +2.3 +2.4 +2.5
no stress control Glucose (C) and Betaine (N); with TAPS -0.3 +2.3 +2.4 +2.4 +2.5
no stress control Glucose (C) and Betaine (N); with TAPS -0.0 +2.6 +2.4 +2.4 +2.3
carbon source p-Coumaric (C) 5 mM -0.2 +2.7 +2.5 +2.4 +2.4
no stress control Glucose (C) and Betaine (N); with MOPS -0.3 +2.6 +2.6 +2.6 +2.4
no stress control Glucose (C) and Betaine (N); with TAPS +0.3 +2.6 +2.6 +2.2 +2.4
carbon source p-Coumaric (C) 5 mM +0.6 +2.2 +2.6 +2.6 +2.2
carbon source p-Coumaric (C) 5 mM +0.5 +2.4 +2.6 +2.4 +2.4
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.0 +3.0 +3.2 +3.3 +3.4
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.0 +3.0 +3.2 +3.2 +3.7
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.9 +3.2 +3.2 +3.1 +3.4
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.4 +3.3 +3.3 +3.4 +3.5
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