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Protein
Homologs
Fitness for 5 genes in
Azospirillum sp. SherDot2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
MPMX19_04541 and MPMX19_04542 overlap by 4 nucleotides
MPMX19_04542 and MPMX19_04543 are separated by 177 nucleotides
MPMX19_04543 and MPMX19_04544 are separated by 141 nucleotides
MPMX19_04544 and MPMX19_04545 are separated by 44 nucleotides
MPMX19_04541: MPMX19_04541 - Lipopolysaccharide export system ATP-binding protein LptB, at 914,342 to 915,175
_04541
MPMX19_04542: MPMX19_04542 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 915,172 to 915,897
_04542
MPMX19_04543: MPMX19_04543 - hypothetical protein, at 916,075 to 916,809
_04543
MPMX19_04544: MPMX19_04544 - hypothetical protein, at 916,951 to 920,484
_04544
MPMX19_04545: MPMX19_04545 - hypothetical protein, at 920,529 to 921,206
_04545
Group
Condition
MPMX19
_04541
MPMX19
_04542
MPMX19
_04543
MPMX19
_04544
MPMX19
_04545
mgl
MGL
N.D.
-0.9
N.D.
+0.0
N.D.
mgl
MGL
N.D.
-0.7
N.D.
-0.1
N.D.
mgl
MGL
N.D.
-0.4
N.D.
-0.3
N.D.
nl-ccm; low oxygen
NL-CCM; low oxygen
N.D.
-0.4
N.D.
-0.1
N.D.
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
N.D.
-0.3
N.D.
-0.1
N.D.
mixed community
NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
N.D.
-0.1
N.D.
-0.1
N.D.
mgl
MGL
N.D.
+0.2
N.D.
-0.3
N.D.
mgl
MGL
N.D.
+0.2
N.D.
-0.3
N.D.
nl-ccm
NL-CCM, start OD=0.3
N.D.
-0.2
N.D.
+0.2
N.D.
nl-ccm; high oxygen
NL-CCM; high oxygen
N.D.
+0.2
N.D.
-0.1
N.D.
nf_with10percent_fulln
NF_with10percent_fullN
N.D.
+0.2
N.D.
-0.1
N.D.
nl-ccm
NL-CCM, start OD=0.1
N.D.
+0.3
N.D.
-0.1
N.D.
nf_with10percent_fulln
NF_with10percent_fullN
N.D.
+0.3
N.D.
-0.1
N.D.
nf_with10percent_fulln
NF_with10percent_fullN
N.D.
+0.3
N.D.
-0.1
N.D.
nf
NF
N.D.
+0.3
N.D.
-0.1
N.D.
nln
NLN
N.D.
+0.3
N.D.
-0.1
N.D.
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
N.D.
+0.1
N.D.
+0.2
N.D.
nl-ccm_agar
NL-CCM_agar
N.D.
+0.3
N.D.
+0.0
N.D.
nl-ccm_agar
NL-CCM_agar
N.D.
+0.3
N.D.
+0.0
N.D.
nl-ccm; spin-x control
NL-CCM; spin-x control
N.D.
+0.3
N.D.
+0.1
N.D.
nf_with_fulln
NF_with_fullN
N.D.
+0.3
N.D.
+0.1
N.D.
nf_with_fulln
NF_with_fullN
N.D.
+0.3
N.D.
+0.0
N.D.
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
N.D.
+0.2
N.D.
+0.1
N.D.
nl-ccm; ambient oxygen
NL-CCM; ambient oxygen
N.D.
+0.3
N.D.
+0.1
N.D.
nf_with10percent_fulln
NF_with10percent_fullN
N.D.
+0.2
N.D.
+0.2
N.D.
nf_with_fulln
NF_with_fullN
N.D.
+0.2
N.D.
+0.2
N.D.
nf
NF
N.D.
+0.4
N.D.
+0.0
N.D.
mixed community
NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
N.D.
+0.3
N.D.
+0.1
N.D.
nf_with_fulln
NF_with_fullN
N.D.
+0.3
N.D.
+0.1
N.D.
nf_with_fulln
NF_with_fullN
N.D.
+0.3
N.D.
+0.1
N.D.
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