Fitness for 5 genes in Methanococcus maripaludis JJ

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500 ntMMJJ_RS00980 and MMJJ_RS09245 are separated by 157 nucleotidesMMJJ_RS09245 and MMJJ_RS00985 are separated by 256 nucleotidesMMJJ_RS00985 and MMJJ_RS00990 overlap by 8 nucleotidesMMJJ_RS00990 and MMJJ_RS00995 are separated by 139 nucleotides MMJJ_RS00980: MMJJ_RS00980 - flavodoxin family protein, at 189,409 to 189,960 _RS00980 MMJJ_RS09245: MMJJ_RS09245 - hypothetical protein, at 190,118 to 190,273 _RS09245 MMJJ_RS00985: MMJJ_RS00985 - permease, at 190,530 to 191,018 _RS00985 MMJJ_RS00990: MMJJ_RS00990 - ferredoxin, at 191,011 to 191,247 _RS00990 MMJJ_RS00995: MMJJ_RS00995 - TetR/AcrR family transcriptional regulator, at 191,387 to 191,965 _RS00995
Group Condition MMJJ_RS00980 MMJJ_RS09245 MMJJ_RS00985 MMJJ_RS00990 MMJJ_RS00995
rich t2 H2 McCas, 5g/L bicarb, 40 psi H2CO2 -0.1 +0.1 -0.3 -0.1 -4.1
nutrient t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE -0.2 -0.3 -0.1 +0.1 -4.1
nutrient t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 Vitamin & Casamino Acid FREE -0.3 -0.8 +0.1 -0.1 -2.9
nutrient t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE +0.0 -0.1 +0.0 -0.0 -3.4
nutrient t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE -0.2 -0.1 +0.0 +0.0 -3.1
rich t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 FREE -0.3 -0.2 +0.0 +0.1 -2.5
rich t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2 -0.2 -0.1 +0.0 +0.1 -2.6
nutrient t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Casamino Acid FREE -0.3 -0.6 -0.1 -0.0 -1.6
rich t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2 -0.2 -0.4 -0.1 +0.0 -1.8
rich t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 FREE -0.3 -0.4 -0.1 -0.1 -1.6
rich t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2 -0.2 -0.3 +0.0 -0.0 -2.0
stress McCas_formate_complete hypophosphite 62.5 mM -0.4 -0.2 -0.2 -0.5 -1.0
nutrient t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Casamino Acid FREE -0.2 -0.6 -0.1 -0.0 -1.3
rich t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 FREE -0.1 -0.2 -0.0 +0.1 -1.8
stress McCas_formate_complete Phenazine methosulfate 0.0166666666666667 mM -0.8 -0.6 -0.3 -0.0 -0.3
iron control, 1x iron with casaminos and vitamins, H2 media -0.2 -0.3 -0.0 -0.0 -1.3
nutrient t2 H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 Vitamin & Casamino Acid FREE -0.1 -0.6 +0.1 -0.0 -1.2
nitrogen source H2 N-free with 2g/L casaminos 10mM Ammonium chloride -0.1 -0.1 +0.1 -0.0 -1.6
iron control, 1x iron with casaminos and vitamins, H2 media -0.1 -0.2 -0.1 +0.1 -1.4
iron Iron limitation (0.2x), H2 media -0.1 -0.4 -0.1 +0.1 -1.2
stress McCas_formate_complete deta nonoate 0.025 mM -0.5 -0.0 -0.0 +0.2 -1.2
planktonic H2 pooled triplicate planktonic cells -0.3 -0.2 +0.0 +0.1 -1.3
stress McCas_formate_complete sulfate 125 mM -0.6 +0.1 +0.1 -1.0 +0.3
stress McCas_formate_complete Ticarcillin 12.5 mM -0.5 +0.5 -0.2 -0.5 -0.7
stress McCas_formate_complete selenate 31.25 mM -0.4 +0.8 -0.3 -0.1 -0.7
stress McCas_formate_complete 3-nitroxypropanol 0.00208333333333333 mM -0.5 +0.8 -0.3 +0.1 +0.1
stress McCas_formate_complete sodium nitrite 0.416666666666667 mM -0.2 +0.8 -0.5 +0.2 +0.4
nitrogen source H2 N-free with 2mM Adenosine +0.2 -0.4 -0.3 -0.1 +2.2
nitrogen source H2 N-free with 2mM Adenosine +0.8 +0.1 -0.4 +0.1 +1.5
nitrogen source H2 N-free with 2mM Adenosine +0.8 +0.2 +0.4 -0.1 +1.8
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