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Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC98
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500 nt
tolC and nudF are separated by 204 nucleotides
nudF and yqiB are separated by 0 nucleotides
yqiB and cpdA are separated by 24 nucleotides
cpdA and cpdA overlap by 1 nucleotides
JDDGAC_22440: tolC - outer membrane channel protein TolC, at 4,292,281 to 4,293,762
tolC
JDDGAC_22445: nudF - ADP-ribose diphosphatase, at 4,293,967 to 4,294,596
nudF
JDDGAC_22450: yqiB - DUF1249 domain-containing protein, at 4,294,597 to 4,295,019
yqiB
JDDGAC_22455: cpdA - 3',5'-cyclic-AMP phosphodiesterase, at 4,295,044 to 4,295,871
cpdA
JDDGAC_22460: cpdA - 3',5'-cyclic-AMP phosphodiesterase, at 4,295,871 to 4,296,452
cpdA
Group
Condition
JDDGAC
_22440
JDDGAC
_22445
JDDGAC
_22450
JDDGAC
_22455
JDDGAC
_22460
tolC
nudF
yqiB
cpdA
cpdA
phage
WM_EV240
-4.1
-0.4
-0.3
-2.1
-0.7
phage
WM_JK36
-5.0
+0.0
-0.1
-1.4
-0.5
phage
WM_JK36
-5.0
+0.2
-0.4
-0.7
-0.1
phage
WM_EV240
-3.5
+0.3
-0.3
-1.6
-0.8
phage
Bas37
-2.7
-0.1
-0.4
-1.9
+0.1
phage
WM_TP15
-3.0
+0.2
-0.3
-1.3
-0.2
phage
WM_TP11
-2.3
-0.2
-0.3
-1.1
-0.2
phage
GB_Bas36
-0.9
-1.2
-0.1
-1.2
-0.4
phage
Bas36
-1.7
+0.5
-0.2
-2.1
-0.1
phage
Bas36
-1.5
-0.3
-0.1
-1.6
+0.1
phage
GB_JK32
-1.1
-0.2
-0.1
-1.5
-0.1
no phage control
Control_ECRC98_WM
-1.1
-0.5
-0.5
-0.8
-0.2
phage
Bas37
-1.2
-0.4
-0.1
-1.1
-0.0
phage
WM_TP11
-2.3
+0.0
+0.1
-0.5
-0.1
phage
WM_K30
-0.8
-0.2
-0.2
-0.9
-0.5
phage
EV219
-1.8
-0.4
+0.2
-0.3
-0.2
phage
WM_RB68
-1.0
-0.9
-0.5
-0.1
-0.1
phage
WM_TP12
-1.6
-0.1
+0.1
-0.6
-0.1
no phage control
Control_ECRC98
-1.9
+0.0
-0.3
-0.6
+0.3
phage
WM_T2
-1.1
-0.4
+0.0
-0.6
-0.2
phage
WM_TP15
-1.4
+0.3
+0.2
-1.0
-0.3
phage
WM_JK45
-2.1
+0.3
+0.2
-0.3
-0.2
phage
Bas14
-1.1
+0.1
-0.2
-0.5
-0.3
phage
EV219
-1.2
+0.3
-0.4
-0.1
-0.3
no phage control
Control_ECRC98_WM
-1.3
+0.4
+0.2
-0.5
-0.5
phage
Lambda
-1.3
+0.4
-0.2
-0.5
-0.0
phage
WM_TP12
-0.9
+0.4
-0.4
-0.6
+0.2
no phage control
Control_ECRC98_WM
-0.6
+0.6
-0.6
-0.8
+0.3
phage
TP9
-1.4
-0.3
-0.0
+0.6
+0.3
phage
WM_TP12
-0.7
+0.7
-0.1
-1.1
+0.4
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