Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF6127 and GFF6128 are separated by 228 nucleotidesGFF6128 and GFF6129 overlap by 4 nucleotidesGFF6129 and GFF6130 are separated by 22 nucleotidesGFF6130 and GFF6131 are separated by 141 nucleotides GFF6127 - Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit, at 28,139 to 29,281 GFF6127 GFF6128 - Exodeoxyribonuclease VII small subunit (EC 3.1.11.6), at 29,510 to 29,776 GFF6128 GFF6129 - (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10), at 29,773 to 30,696 GFF6129 GFF6130 - 1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7), at 30,719 to 32,572 GFF6130 GFF6131 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 32,714 to 33,445 GFF6131
Group Condition GFF6127 GFF6128 GFF6129 GFF6130 GFF6131
complex community Community=arabino-guar; Passage=4 -3.6 -1.1 -2.7 N.D. -0.8
complex community Community=Locust bean gum; Passage=4 -3.7 -2.2 -1.9 N.D. -0.3
complex community Community=arabino-guar; Passage=4 -2.9 -2.2 -2.4 N.D. +0.1
complex community Community=guar; Passage=4 -2.9 -2.1 -2.2 N.D. +0.2
complex community Community=Kojac gum; Passage=4 -3.1 -2.0 -1.7 N.D. -0.0
complex community Community=Locust bean gum; Passage=4 -3.1 -1.1 -2.3 N.D. -0.2
complex community Community=Locust bean gum; Passage=4 -3.0 -1.5 -1.8 N.D. +0.2
complex community Community=guar; Passage=4 -2.7 -0.7 -2.2 N.D. -0.1
complex community Community=guar; Passage=4 -2.2 -1.2 -2.1 N.D. +0.0
complex community Community=arabino-guar; Passage=4 -2.7 +0.4 -2.4 N.D. +0.1
complex community Community=arabino-guar; Passage=4 -3.7 +1.3 -2.1 N.D. +0.0
complex community Community=guar; Passage=4 -2.1 -1.0 -1.1 N.D. -0.1
complex community Community=Locust bean gum; Passage=4 -3.1 +0.2 -1.3 N.D. +0.4
no phage control no phage control -0.2 -1.6 -0.8 N.D. -0.1
phage phage_bap4 -0.2 -1.2 -1.1 N.D. +0.1
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.2 -1.5 +0.0 N.D. -0.0
phage phage_bap4 -0.0 -1.5 -0.2 N.D. +0.1
phage phage_bap4 -0.2 -0.8 -0.5 N.D. +0.2
no phage control no phage control -0.2 -0.7 -0.7 N.D. +0.2
phage phage_bap4 -0.0 -0.7 -0.5 N.D. -0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.0 -0.5 -0.3 N.D. -0.2
phage phage_bap4 -0.3 -0.3 -0.7 N.D. +0.3
no phage control no phage control -0.2 -0.5 -0.3 N.D. -0.0
no phage control no phage control -0.1 +0.1 -0.9 N.D. -0.1
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.0 -0.7 -0.2 N.D. +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.1 -0.4 -0.2 N.D. -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.1 -0.6 +0.1 N.D. +0.1
vitamin M9 with Supernatant from Cyptococcus +0.1 +0.4 -0.2 N.D. -0.4
vitamin M9 with Supernatant from Cyptococcus +0.2 +0.6 -0.3 N.D. -0.1
vitamin M9 with calcium pantothenate 10 mg/mL +0.3 +0.5 +0.4 N.D. -0.0
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