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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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500 nt
GFF484 and GFF485 are separated by 18 nucleotides
GFF485 and GFF486 are separated by 31 nucleotides
GFF486 and GFF487 are separated by 489 nucleotides
GFF487 and GFF488 are separated by 23 nucleotides
GFF484 - Glutamate racemase (EC 5.1.1.3), at 523,597 to 524,397
GFF484
GFF485 - hypothetical protein, at 524,416 to 525,201
GFF485
GFF486 - FIG00582348: hypothetical protein, at 525,233 to 525,874
GFF486
GFF487 - ATP-dependent protease La (EC 3.4.21.53) Type I, at 526,364 to 528,805
GFF487
GFF488 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 528,829 to 530,094
GFF488
Group
Condition
GFF484
GFF485
GFF486
GFF487
GFF488
complex community
Community=Locust bean gum; Passage=4
N.D.
-0.2
-0.3
-2.6
-2.5
complex community
Community=Locust bean gum; Passage=4
N.D.
+0.1
-0.6
-2.6
-2.5
complex community
Community=Locust bean gum; Passage=4
N.D.
-0.4
-0.6
-2.2
-2.2
complex community
Community=arabino-guar; Passage=4
N.D.
-0.4
-0.8
-2.4
-1.8
complex community
Community=Locust bean gum; Passage=4
N.D.
+0.5
-1.1
-2.1
-2.2
complex community
Community=Kojac gum; Passage=4
N.D.
+0.4
-0.3
-2.6
-2.3
complex community
Community=guar; Passage=4
N.D.
+0.4
-0.7
-2.9
-1.6
complex community
Community=guar; Passage=4
N.D.
+0.3
-0.3
-2.5
-2.3
complex community
Community=arabino-guar; Passage=4
N.D.
-0.1
-0.9
-2.3
-1.5
complex community
Community=guar; Passage=4
N.D.
+0.4
-0.4
-2.0
-2.4
complex community
Community=guar; Passage=4
N.D.
+0.4
-0.4
-2.1
-2.0
complex community
Community=arabino-guar; Passage=4
N.D.
+0.5
+0.0
-2.0
-2.3
complex community
Community=arabino-guar; Passage=4
N.D.
+0.5
-0.6
-2.0
-1.4
no phage control
no phage control
N.D.
+0.1
-0.0
-1.8
-0.8
no phage control
no phage control
N.D.
+0.1
-0.3
-1.5
-0.8
phage
phage_bap4
N.D.
-0.0
-0.3
-1.4
-0.8
phage
phage_bap4
N.D.
+0.1
+0.1
-1.9
-0.7
phage
phage_bap4
N.D.
-0.0
-0.1
-1.5
-0.7
phage
phage_bap4
N.D.
+0.1
-0.2
-1.5
-0.5
phage
phage_bap4
N.D.
+0.1
-0.2
-1.3
-0.7
no phage control
no phage control
N.D.
+0.2
-0.3
-1.3
-0.6
phage
phage_bap4
N.D.
-0.0
-0.2
-1.3
-0.4
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
N.D.
-0.0
+0.0
-1.4
-0.5
phage
phage_bap4
N.D.
+0.2
-0.1
-1.4
-0.6
vitamin
M9 with calcium pantothenate 10 mg/mL
N.D.
+0.2
+0.0
-1.4
-0.7
vitamin
M9 with calcium pantothenate 10 mg/mL
N.D.
+0.0
-0.1
-1.2
-0.6
vitamin
M9 with calcium pantothenate 10 mg/mL
N.D.
-0.1
-0.0
-1.1
-0.7
vitamin
M9 with calcium pantothenate 10 mg/mL
N.D.
+0.0
-0.2
-1.1
-0.6
no phage control
no phage control
N.D.
+0.1
-0.0
-1.2
-0.7
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
N.D.
+0.3
-0.1
-1.2
-0.6
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