Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_3564 and Psest_3565 are separated by 45 nucleotidesPsest_3565 and Psest_3566 are separated by 1 nucleotidesPsest_3566 and Psest_3567 overlap by 1 nucleotidesPsest_3567 and Psest_3568 are separated by 11 nucleotides Psest_3564: Psest_3564 - Uncharacterized protein conserved in bacteria, at 3,739,838 to 3,740,350 _3564 Psest_3565: Psest_3565 - hypothetical protein, at 3,740,396 to 3,741,487 _3565 Psest_3566: Psest_3566 - TonB family C-terminal domain, at 3,741,489 to 3,742,202 _3566 Psest_3567: Psest_3567 - Biopolymer transport protein, at 3,742,202 to 3,742,615 _3567 Psest_3568: Psest_3568 - Biopolymer transport proteins, at 3,742,627 to 3,743,172 _3568
Group Condition Psest_3564 Psest_3565 Psest_3566 Psest_3567 Psest_3568
stress Cobalt chloride 0.07 mM +0.0 -5.3 N.D. N.D. N.D.
stress Cobalt chloride 0.07 mM -0.0 -5.1 N.D. N.D. N.D.
stress nitrite 2.5 mM -0.6 -4.4 N.D. N.D. N.D.
stress Cobalt chloride 0.08 mM +0.2 -5.1 N.D. N.D. N.D.
metal limitation Anaerobic, no iron sample3 -0.3 -4.2 N.D. N.D. N.D.
stress Anaerobic 50 uM Lead (II) nitrate sample3 -0.1 -4.3 N.D. N.D. N.D.
stress benzoic 0.4 mg/ml -0.7 -3.2 N.D. N.D. N.D.
stress nitrite 2.5 mM -0.9 -3.0 N.D. N.D. N.D.
stress Def Chloride 400 mM -0.6 -3.2 N.D. N.D. N.D.
stress Thallium(I) acetate 0.1 mg/ml +0.2 -3.9 N.D. N.D. N.D.
stress benzoic 0.4 mg/ml +0.2 -3.8 N.D. N.D. N.D.
metal limitation Anaerobic, no iron sample1 -0.4 -3.0 N.D. N.D. N.D.
stress Cobalt chloride 0.05 mM -0.1 -3.3 N.D. N.D. N.D.
stress Lactate-nitrate; anaerobic; cobalt stress sample1 -0.0 -3.2 N.D. N.D. N.D.
carbon source L-tyrosine (C) +0.0 -3.2 N.D. N.D. N.D.
stress Cobalt chloride 0.06 mM -0.0 -3.0 N.D. N.D. N.D.
stress Thallium(I) acetate 0.09 mg/ml +0.1 -3.1 N.D. N.D. N.D.
RCH2 grown on a colony of 8R2A -1.2 -1.8 N.D. N.D. N.D.
stress Spectinomycin 0.00625 mg/ml -0.2 -2.8 N.D. N.D. N.D.
temperature LB 30C timecourse1 timepoint 3 -0.5 -2.4 N.D. N.D. N.D.
stress Benzethonium chloride 0.0125 mM +0.0 -2.9 N.D. N.D. N.D.
RCH2 grown on a colony of N2C3 -0.1 -2.7 N.D. N.D. N.D.
RCH2 grown on a colony of Serratia +0.3 -2.9 N.D. N.D. N.D.
stress A22 0.002 mg/ml +0.2 -2.6 N.D. N.D. N.D.
stress Def Carbenicillin 0.02 mg/ml +0.4 -2.6 N.D. N.D. N.D.
stress Def Cephalothin 0.04 mg/ml +0.3 -2.4 N.D. N.D. N.D.
temperature Glucose defined 30C timecourse1 timepoint 3 +0.7 -2.1 N.D. N.D. N.D.
RCH2 grown on a colony of Pseudomonas migulae strain N1B4 -0.1 +3.2 N.D. N.D. N.D.
stress methylglyoxal 0.0016 vol% -0.3 +4.5 N.D. N.D. N.D.
stress Furfuryl Alcohol 0.05 vol% -0.1 +4.5 N.D. N.D. N.D.
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