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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingobium sp. HT1-2
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Top 18 experiments (either direction), sorted by average fitness
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500 nt
GFF3400 and GFF3401 are separated by 318 nucleotides
GFF3401 and GFF3402 are separated by 643 nucleotides
GFF3402 and GFF3403 are separated by 36 nucleotides
GFF3403 and GFF3404 overlap by 11 nucleotides
GFF3400 - L-lactate dehydrogenase, at 3,445,282 to 3,446,415
GFF3400
GFF3401 - L-lactate dehydrogenase (EC 1.1.1.27), at 3,446,734 to 3,447,591
GFF3401
GFF3402 - Tetrapartite efflux system, inner membrane component FusBC-like, at 3,448,235 to 3,449,185
GFF3402
GFF3403 - Mobile element protein, at 3,449,222 to 3,450,028
GFF3403
GFF3404 - Transposase for insertion sequences IS1326/IS1353, at 3,450,018 to 3,451,541
GFF3404
Group
Condition
GFF3400
GFF3401
GFF3402
GFF3403
GFF3404
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.6
+0.3
+0.5
+0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.5
+0.5
+0.5
+0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.5
+0.6
+0.5
+0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.6
+0.5
+0.6
+0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.5
+0.7
+0.5
+0.0
+0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.6
+0.8
+0.5
+0.0
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.6
+0.6
+0.6
+0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.4
+0.7
+0.6
+0.2
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.6
+0.6
+0.6
+0.2
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.6
+0.8
+0.4
+0.2
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.7
+0.6
+0.7
+0.1
+0.0
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.6
+0.8
+0.5
+0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.4
+1.0
+0.6
+0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.7
+0.8
+0.4
+0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.6
+0.6
+0.7
+0.2
+0.2
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.8
+0.7
+0.6
+0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.7
+1.1
+0.7
+0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.7
+1.0
+0.8
+0.1
+0.1
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