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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingobium sp. HT1-2
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Top 18 experiments (either direction), sorted by average fitness
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500 nt
GFF3041 and GFF3042 are separated by 192 nucleotides
GFF3042 and GFF3043 are separated by 42 nucleotides
GFF3043 and GFF3044 are separated by 136 nucleotides
GFF3044 and GFF3045 are separated by 80 nucleotides
GFF3041 - Transcriptional Regulator, LysR family, at 3,116,766 to 3,117,707
GFF3041
GFF3042 - TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins, at 3,117,900 to 3,119,864
GFF3042
GFF3043 - Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22), at 3,119,907 to 3,121,214
GFF3043
GFF3044 - Outer membrane protein W precursor, at 3,121,351 to 3,122,022
GFF3044
GFF3045 - Histone acetyltransferase HPA2 and related acetyltransferases, at 3,122,103 to 3,122,606
GFF3045
Group
Condition
GFF3041
GFF3042
GFF3043
GFF3044
GFF3045
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.1
-0.1
-0.0
-0.8
-0.3
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.1
-0.2
-0.4
-0.3
-0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.1
+0.0
+0.0
-0.9
+0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.2
+0.0
+0.1
-0.2
-0.3
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.1
-0.0
+0.2
-0.3
-0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.0
-0.0
+0.1
-0.2
-0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.1
+0.0
-0.1
-0.0
+0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.0
+0.1
-0.5
+0.4
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.2
+0.0
+0.1
+0.2
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.0
-0.0
-0.0
-0.0
+0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.0
+0.2
+0.2
-0.2
-0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.1
+0.1
-0.0
-0.1
+0.3
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.0
+0.0
+0.2
+0.0
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.2
-0.1
-0.0
+0.2
+0.2
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.1
-0.0
+0.2
+0.1
-0.0
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.3
-0.0
+0.1
+0.6
+0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.0
-0.1
+0.3
+0.3
+0.0
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.0
-0.0
+0.0
+0.6
+0.1
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