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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingobium sp. HT1-2
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Top 18 experiments (either direction), sorted by average fitness
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500 nt
GFF3030 and GFF3031 are separated by 225 nucleotides
GFF3031 and GFF3032 overlap by 4 nucleotides
GFF3032 and GFF3033 are separated by 7 nucleotides
GFF3033 and GFF3034 overlap by 4 nucleotides
GFF3030 - hypothetical protein, at 3,105,692 to 3,105,850
GFF3030
GFF3031 - Copper resistance protein B, at 3,106,076 to 3,106,948
GFF3031
GFF3032 - Multicopper oxidase, at 3,106,945 to 3,108,684
GFF3032
GFF3033 - RNA polymerase, sigma-24 subunit, ECF subfamily, at 3,108,692 to 3,109,267
GFF3033
GFF3034 - hypothetical protein, at 3,109,264 to 3,109,698
GFF3034
Group
Condition
GFF3030
GFF3031
GFF3032
GFF3033
GFF3034
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-1.9
+0.4
+0.1
-1.0
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-1.6
+0.2
+0.0
-0.2
-0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-1.6
-0.2
+0.0
+0.1
+0.2
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.9
+0.1
+0.0
-0.2
-0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.8
-0.0
+0.0
+0.0
-0.2
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.8
+0.0
-0.1
-0.0
-0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.7
-0.2
-0.1
-0.1
+0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.6
-0.1
-0.1
+0.1
+0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.6
+0.1
-0.0
-0.2
-0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.3
-0.0
-0.2
-0.1
-0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.6
+0.0
-0.1
+0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.6
+0.2
-0.1
+0.0
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.0
+0.1
-0.2
-0.2
-0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.4
+0.1
-0.0
+0.1
-0.0
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.0
-0.0
-0.1
-0.2
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.0
+0.1
-0.0
-0.0
-0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.4
+0.0
-0.1
-0.1
-0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.3
+0.1
-0.0
+0.0
+0.2
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