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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_2522 and Psest_2523 are separated by 48 nucleotides
Psest_2523 and Psest_2524 are separated by 63 nucleotides
Psest_2524 and Psest_2525 are separated by 13 nucleotides
Psest_2525 and Psest_2526 are separated by 92 nucleotides
Psest_2522: Psest_2522 - PAS domain S-box, at 2,702,083 to 2,703,651
_2522
Psest_2523: Psest_2523 - Predicted hydrolase of the alpha/beta-hydrolase fold, at 2,703,700 to 2,704,392
_2523
Psest_2524: Psest_2524 - cytochrome c oxidase, cbb3-type, subunit I, at 2,704,456 to 2,705,880
_2524
Psest_2525: Psest_2525 - cytochrome c oxidase, cbb3-type, subunit II, at 2,705,894 to 2,706,505
_2525
Psest_2526: Psest_2526 - cytochrome c oxidase, cbb3-type, subunit III, at 2,706,598 to 2,707,533
_2526
Group
Condition
Psest
_2522
Psest
_2523
Psest
_2524
Psest
_2525
Psest
_2526
stress
Chlorate 75 mM
-0.3
-1.1
-0.4
-2.3
-2.5
stress
Def Chlorate 20 mM
+0.2
-0.2
-0.3
-2.1
-1.8
stress
Def Chlorate 40 mM
+0.1
-0.5
-0.1
-2.1
-1.5
temperature
LB 30C timecourse1 timepoint 3
-0.5
-0.4
-1.1
-0.8
-0.9
stress
Def Carbenicillin 0.008 mg/ml
-0.4
-0.8
-0.8
-0.6
-0.2
temperature
LB 30C timecourse2 timepoint 1
-0.4
-0.4
-0.4
-1.0
-0.4
anaerobic
Nitrite/ lactate media with Nitrite 20mM
-0.3
+0.3
-0.0
-1.1
-0.8
anaerobic
Nitrate/ lactate media with Nitrate 250mM
+0.2
-0.7
+0.3
-1.1
-0.0
stress
Chloride 200 mM
-0.4
-0.8
-0.3
-0.4
+0.5
stress
Doxycycline hyclate 0.0002 mg/ml
+0.2
-0.4
-0.3
-0.9
+0.4
nutrient
Min media with glucose
+2.1
-0.5
-0.3
-1.4
-0.7
carbon source
propionate (C)
+0.4
+0.0
+0.4
-0.9
-0.7
carbon source
L-tyrosine (C)
+0.2
-0.3
+0.6
-0.9
-0.1
vitamin
No vitamins t2
+1.7
-0.4
-0.1
-0.6
-0.8
RCH2 grown on a colony of Serratia
+0.2
+0.6
+0.4
-1.1
-0.1
stress
Cephalothin 0.04 mg/ml
-0.3
-0.6
-0.3
+1.1
+0.1
RCH2 grown on a colony of 8R2A
+0.2
+0.5
+0.3
-1.4
+0.5
vitamin
With vitamins t2
+1.2
-0.3
-0.1
+0.1
-0.5
nutrient
L-Histidine
+1.5
-0.0
+0.0
-0.1
-1.0
nutrient
L-tyrosine
+1.4
-0.3
+0.4
-0.8
-0.2
vitamin
No vitamins t1
+1.8
-0.5
+0.0
+0.1
-0.7
nutrient
L-Histidine
+1.6
+0.1
-0.2
-0.6
-0.2
nutrient
L-tyrosine
+1.5
-0.5
+0.0
+0.6
-0.7
carbon source
propionate (C)
+0.2
+1.2
+0.1
-0.6
+0.2
stress
Thallium(I) acetate 0.1 mg/ml
+0.0
-0.4
-0.2
+0.7
+0.9
vitamin
With vitamins t1
+1.4
-0.4
-0.1
+0.3
-0.1
stress
Def Polymyxin B sulfate 0.00008 mg/ml
-0.2
-0.2
-0.1
+1.0
+0.6
stress
Gentamicin 0.0016 mg/ml
-0.3
-0.1
-0.2
+1.5
+0.8
stress
Def Polymyxin B sulfate 0.0001 mg/ml
-0.1
+0.2
+0.2
+1.0
+0.7
stress
Def 2-Furfuraldehyde 0.032 vol%
+0.2
-0.3
+0.5
+1.0
+0.7
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