Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_10830	PS417_10835	PS417_10840	PS417_10845	PS417_10850
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.5	-1.4	N.D.	N.D.
exudates	RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x	N.D.	-0.4	-0.8	N.D.	N.D.
agar plate interaction control	Taped volatile agar plate with no fungus	N.D.	-0.0	-1.1	N.D.	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.2	-0.9	N.D.	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	+0.1	-1.1	N.D.	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.0	-1.1	N.D.	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.2	-0.8	N.D.	N.D.
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x	N.D.	-0.3	-0.7	N.D.	N.D.
exudates	RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 1x	N.D.	-0.1	-0.8	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.4	-0.6	N.D.	N.D.
phage	P. simiae OR Antrim MOI 10	N.D.	-0.2	-0.7	N.D.	N.D.
rhizosphere	rhizosphere sample 2; outgrowth in LB	N.D.	-0.2	-0.7	N.D.	N.D.
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	+0.0	-0.8	N.D.	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	+0.1	-0.8	N.D.	N.D.
solid stress	Fraxetin 1 mM; solid stress	N.D.	+0.1	-0.7	N.D.	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.2	-0.6	N.D.	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.4	-0.4	N.D.	N.D.
seeds	Growth on radish seeds for 72 hours	N.D.	-0.3	+0.6	N.D.	N.D.
phage	Wcs_1	N.D.	-0.3	+0.9	N.D.	N.D.
soil	soil sample 7; outgrowth in LB	N.D.	-0.2	+0.8	N.D.	N.D.
soil	soil sample 4; outgrowth in LB	N.D.	-0.4	+1.0	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.2	+0.6	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.2	+0.6	N.D.	N.D.
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	N.D.	+0.1	+0.8	N.D.	N.D.
carbon source	NAG (C)	N.D.	+0.2	+0.7	N.D.	N.D.
stress	Nalidixic 0.025 mg/ml	N.D.	+0.2	+0.7	N.D.	N.D.
carbon source	octanoate (C)	N.D.	+0.0	+0.9	N.D.	N.D.
nophagecontrol	Only library	N.D.	+0.3	+0.6	N.D.	N.D.
phage	P. simiae Grant Run MOI 0.1	N.D.	-0.4	+1.4	N.D.	N.D.
seeds	Growth on radish seeds for 72 hours	N.D.	+0.3	+1.2	N.D.	N.D.