Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_1994 and Psest_1995 are separated by 300 nucleotidesPsest_1995 and Psest_1996 are separated by 214 nucleotidesPsest_1996 and Psest_1997 overlap by 14 nucleotidesPsest_1997 and Psest_1998 are separated by 17 nucleotides Psest_1994: Psest_1994 - Amidases related to nicotinamidase, at 2,111,189 to 2,111,785 _1994 Psest_1995: Psest_1995 - protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific, at 2,112,086 to 2,113,009 _1995 Psest_1996: Psest_1996 - glucose-6-phosphate 1-dehydrogenase, at 2,113,224 to 2,114,693 _1996 Psest_1997: Psest_1997 - 6-phosphogluconolactonase, at 2,114,680 to 2,115,393 _1997 Psest_1998: Psest_1998 - Entner-Doudoroff aldolase, at 2,115,411 to 2,116,055 _1998
Group Condition Psest_1994 Psest_1995 Psest_1996 Psest_1997 Psest_1998
temperature Glucose defined 30C timecourse1 timepoint 2 -4.0 -0.1 -0.0 -0.6 -0.1
temperature Glucose defined 30C timecourse1 timepoint 3 -4.5 +0.0 -0.2 -0.3 +0.2
RCH2 grown on a colony of ecoli -2.2 -1.0 +0.0 -1.3 -0.1
carbon source Anaerobic, Glucose Nitrate sample1 -3.3 +0.1 -0.1 -0.3 +0.1
nutrient L-tyrosine -2.5 -0.0 +0.1 -0.2 -0.8
temperature Glucose defined media 37C sample1 -2.8 -0.1 -0.0 +0.2 -0.6
RCH2 grown on a colony of ecoli -1.9 -0.9 -0.2 +0.4 -0.2
stress Chlorate 75 mM +0.7 -1.1 -0.2 -1.7 -0.2
nutrient L-Histidine -1.1 +0.4 -0.0 -1.5 -0.4
vitamin With vitamins t2 -2.1 -0.1 -0.1 +0.6 -0.5
RCH2 grown on a colony of Serratia -1.7 +0.3 -0.3 -0.5 +0.6
stress Polymyxin B sulfate 0.0001 mg/ml +0.9 -0.4 -0.1 -1.7 +0.3
stress Lactate-nitrate; anaerobic; dichromate stress sample1 +1.1 -0.3 +0.0 -1.4 -0.4
vitamin No vitamins t1 -2.2 -0.1 +0.1 +1.2 +0.3
RCH2 grown on a colony of Serratia -2.1 +0.6 -0.1 +0.8 +0.1
vitamin No vitamins t2 -2.3 +0.2 +0.0 +1.1 +0.2
stress nitrate 250 mM +2.0 -1.1 -0.2 -0.1 -1.0
stress A22 0.002 mg/ml +1.8 -1.6 -0.4 +0.3 -0.4
stress Gentamicin 0.0016 mg/ml +2.0 -0.3 -0.3 -0.6 -0.8
stress Def Carbenicillin 0.008 mg/ml +1.6 -0.9 -0.2 +0.4 -0.6
stress D-Cycloserine 0.032 mg/ml +1.8 -0.6 -0.2 -0.5 +0.3
stress Paraquat dichloride 0.015 mg/ml +2.6 +0.1 +0.0 -1.3 -0.0
nitrogen source L-Alanine (N) +2.2 -0.4 +0.2 +0.2 -0.5
stress nitrate 200 mM +1.6 -0.2 -0.0 -0.6 +0.9
stress Def 2-Furfuraldehyde 0.032 vol% +1.7 -0.3 -0.1 +1.5 -0.6
stress nitrate 200 mM +2.3 -0.8 -0.0 +0.3 +0.8
stress Furfuryl Alcohol 0.05 vol% +2.2 -0.5 +0.3 +0.5 +0.4
stress Lactate-nitrate; anaerobic; dichromate stress sample3 +1.3 -0.3 -0.1 +1.8 +0.3
stress Choline Lysine 20 mM +0.8 +0.8 +0.2 +1.5 +0.2
stress Def Benzalkonium Chloride 0.002 mg/ml +3.5 +0.7 -0.1 +0.0 +0.3
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