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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingobium sp. HT1-2
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Top 18 experiments (either direction), sorted by average fitness
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500 nt
GFF1746 and GFF1747 overlap by 4 nucleotides
GFF1747 and GFF1748 are separated by 203 nucleotides
GFF1748 and GFF1749 overlap by 4 nucleotides
GFF1749 and GFF1750 are separated by 103 nucleotides
GFF1746 - Efflux ABC transporter for glutathione/L-cysteine, essential for assembly of bd-type respiratory oxidases => CydD subunit, at 1,771,720 to 1,773,234
GFF1746
GFF1747 - hypothetical protein, at 1,773,231 to 1,774,856
GFF1747
GFF1748 - Universal stress protein family, at 1,775,060 to 1,775,875
GFF1748
GFF1749 - Acyl-CoA dehydrogenase 2 [fadN-fadA-fadE operon] (EC 1.3.8.7), at 1,775,872 to 1,777,608
GFF1749
GFF1750 - Transcriptional regulator, AcrR family, at 1,777,712 to 1,778,305
GFF1750
Group
Condition
GFF1746
GFF1747
GFF1748
GFF1749
GFF1750
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-1.7
-1.0
-0.4
+0.1
+0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.8
-1.3
+0.1
+0.2
+0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-1.1
-0.5
-0.3
-0.0
+0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.9
-0.9
-0.1
+0.1
+0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.8
-0.6
+0.1
+0.2
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.6
-0.9
+0.1
+0.0
+0.3
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.3
-0.8
-0.0
+0.1
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.6
-0.6
+0.1
+0.1
-0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.6
-0.4
+0.1
+0.2
-0.5
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.4
+0.0
-0.1
-0.1
+0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.6
+0.9
+0.2
-0.0
-0.2
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.3
+0.4
-0.0
+0.1
-0.2
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.3
+0.2
-0.0
+0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.5
+0.2
+0.1
+0.2
-0.0
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.3
+0.4
-0.0
+0.1
+0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.0
+0.4
+0.2
+0.1
+0.3
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.4
+0.6
-0.1
+0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.6
+0.5
+0.2
+0.2
+0.2
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