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Cofit
Protein
Homologs
Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
1
2
3
4
5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_0905 and Dsui_0906 overlap by 1 nucleotides
Dsui_0906 and Dsui_0907 overlap by 4 nucleotides
Dsui_0907 and Dsui_0908 are separated by 34 nucleotides
Dsui_0908 and Dsui_0909 overlap by 43 nucleotides
Dsui_0905: Dsui_0905 - hypothetical protein, at 922,822 to 923,034
_0905
Dsui_0906: Dsui_0906 - putative ATPase, at 923,034 to 924,863
_0906
Dsui_0907: Dsui_0907 - hypothetical protein, at 924,860 to 926,116
_0907
Dsui_0908: Dsui_0908 - hypothetical protein, at 926,151 to 927,032
_0908
Dsui_0909: Dsui_0909 - Caspase domain-containing protein, at 926,990 to 927,691
_0909
Group
Condition
Dsui
_0905
Dsui
_0906
Dsui
_0907
Dsui
_0908
Dsui
_0909
No stressor control+ 10 mM ClO4 and 20 mM lactate
-1.4
-0.4
-0.6
-0.5
-0.8
stress
ALP with Chloride 75 mM
-0.8
-0.1
-0.3
-0.9
-1.3
stress
ALP with nitrate 50 mM
-0.4
-0.2
-0.3
-0.9
-1.2
stress
ALP with nitrate 75 mM
-0.8
-0.2
-0.1
-0.8
-1.2
No stressor control+ 10 mM ClO4 and 20 mM lactate
-1.3
-0.3
-0.4
-0.4
-0.6
No stressor control+ 10 mM ClO4 and 20 mM lactate
-1.3
-0.3
-0.4
-0.4
-0.6
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-1.4
-0.3
-0.3
-0.3
-0.5
stress
ALP with perchlorate 6 mM
-0.1
-0.1
-0.2
-1.0
-1.3
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-1.0
-0.3
-0.4
-0.4
-0.6
stress
ALP with nitrite 0.45 mM
-0.1
-0.2
-0.3
-0.8
-1.2
anaerobic
anaerobic ALP with 3 all (C)s and 5mM perchlorate
-2.7
-0.1
+0.1
+0.0
-0.0
stress
ALP with Zinc 2 mM
-0.1
-0.3
-0.4
-0.8
-1.0
stress
ALP with perchlorate 12 mM
-0.1
-0.2
-0.1
-0.9
-1.3
stress
ALP with nitrite 0.15 mM
-0.0
-0.1
-0.2
-0.8
-1.3
stress
ALP with Zinc 1 mM
-0.1
-0.2
-0.5
-0.7
-1.0
alp richb
ALP
-0.1
-0.1
-0.3
-0.9
-1.1
anaerobic
anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
-2.5
-0.1
+0.0
+0.0
-0.0
stress
ALP with nitrite 0.3 mM
-0.1
-0.1
-0.3
-0.7
-1.2
stress
ALP with sodium fluoride 40 mM
-0.2
-0.1
-0.2
-0.7
-1.2
stress
ALP with perchlorate 3 mM
+0.0
-0.1
-0.1
-0.8
-1.4
stress
ALP with Cobalt chloride 0.25 mM
-0.0
-0.2
-0.4
-0.7
-1.0
stress
ALP with Fusidic 0.007 mg/ml
-0.1
-0.0
-0.1
-0.8
-1.2
carbon source
D,L-Lactate (C)
-0.0
-0.0
-0.4
-0.7
-1.0
stress
ALP with Cisplatin 0.0008 mg/ml
-0.1
-0.1
-0.3
-0.7
-1.0
carbon source
pyruvate (C)
-0.2
-0.1
-0.2
-0.7
-1.0
stress
ALP with sodium fluoride 30 mM
-0.2
-0.1
-0.3
-0.6
-1.0
stress
ALP with Fusidic 0.02 mg/ml
-0.2
-0.1
+0.0
-0.6
-1.3
stress
ALP with Cobalt chloride 0.2 mM
-0.1
-0.2
-0.2
-0.8
-1.0
stress
ALP with Bacitracin 0.2 mg/ml
+0.1
+0.1
+0.2
-0.7
-1.4
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
+0.2
+0.6
+0.6
+0.5
+0.3
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