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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS07350 and DDA3937_RS07355 overlap by 1 nucleotides
DDA3937_RS07355 and DDA3937_RS07360 overlap by 23 nucleotides
DDA3937_RS07360 and DDA3937_RS23085 are separated by 52 nucleotides
DDA3937_RS23085 and DDA3937_RS23090 are separated by 842 nucleotides
DDA3937_RS07350: DDA3937_RS07350 - ABC transporter ATP-binding protein, at 1,656,166 to 1,657,942
_RS07350
DDA3937_RS07355: DDA3937_RS07355 - hypothetical protein, at 1,657,942 to 1,658,796
_RS07355
DDA3937_RS07360: DDA3937_RS07360 - type 2 lantipeptide synthetase LanM, at 1,658,774 to 1,660,318
_RS07360
DDA3937_RS23085: DDA3937_RS23085 - hypothetical protein, at 1,660,371 to 1,660,550
_RS23085
DDA3937_RS23090: DDA3937_RS23090 - hypothetical protein, at 1,661,393 to 1,661,799
_RS23090
Group
Condition
DDA3937
_RS07350
DDA3937
_RS07355
DDA3937
_RS07360
DDA3937
_RS23085
DDA3937
_RS23090
control
PDB
-0.5
-1.0
-0.6
-1.7
+0.7
plant
Stem-Norland
-0.0
-0.1
-0.1
-1.6
-0.3
control
PDB
-0.3
-0.5
-0.4
-0.5
+0.2
plant
Upstate
+0.2
-0.3
-0.0
-1.0
-0.4
stress
1.88mM_PTB
-0.1
-0.2
-0.4
-0.6
-0.2
control
PDB
-0.5
-0.3
-0.5
-0.3
+0.2
plant
Norland
-0.2
+0.0
-0.2
-0.5
-0.5
stress
1.88mM_PTB
-0.1
-0.2
-0.4
-0.6
+0.0
plant
Norland
-0.1
-0.3
+0.1
-0.8
+0.1
control
PDB
+0.1
-0.7
-0.4
+0.5
-0.4
stress
3.75mM_PTB
-0.1
-0.1
-0.4
-0.4
-0.0
plant
Stem-Norland
+0.1
-0.2
-0.3
-0.2
-0.3
stress
3.75mM_PTB
-0.1
-0.2
-0.2
-0.4
+0.1
plant
Upstate
+0.0
-0.1
-0.4
+0.2
-0.4
control
PDB
-0.2
-0.7
-0.1
-0.3
+0.6
control
LB
-0.0
-0.6
-0.2
+0.4
-0.2
plant
Stem-Norland
-0.2
-0.1
+0.4
-0.2
-0.5
plant
Atlantic
+0.1
-0.4
-0.1
-0.3
+0.1
plant
Norland
-0.1
-0.1
-0.3
+0.4
-0.2
plant
Stem-Atlantic
-0.0
+0.4
-0.1
-0.3
-0.4
control
PDB
-0.3
-0.3
-0.1
+0.5
-0.1
plant
Atlantic
+0.1
-0.3
+0.1
-0.3
+0.2
carbon source
M9+glycerol
+0.1
-0.9
+0.2
+0.6
+0.2
plant
Stem-Atlantic
-0.1
+0.0
+0.3
+0.6
-0.6
plant
Atlantic
+0.1
+0.0
-0.4
+0.7
+0.3
carbon source
M9+glucose
+0.1
+0.1
-0.1
+0.3
+0.3
carbon source
M9+glycerol
+0.0
+0.1
-0.1
+0.6
+0.2
carbon source
M9+glycerol
+0.3
-0.1
+0.2
+0.6
+0.0
plant
Atlantic
+0.1
-0.1
-0.3
+1.2
+0.3
plant
Stem-Atlantic
+0.0
+0.2
+0.2
+0.9
-0.1
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