Fitness for 5 genes in Klebsiella michiganensis M5al

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BWI76_RS13750	BWI76_RS13755	BWI76_RS13760	BWI76_RS13765	BWI76_RS13770
exudates	RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x	-0.0	-3.6	N.D.	-0.2	-1.4
nitrogen source	Glucuronamide (N)	-0.1	-3.8	N.D.	+0.2	-1.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.0	-2.6	N.D.	-0.6	-1.7
mixed community	RCH2_defined_noCarbon with Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x	-0.0	-3.8	N.D.	+0.4	-1.3
nitrogen source	Adenosine (N)	-0.2	-4.0	N.D.	-0.1	+0.1
supernatant	Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x	+0.2	-3.7	N.D.	+0.2	-0.6
stress	Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM	-0.1	-3.7	N.D.	-0.1	-0.1
mixed community	RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x	-0.1	-3.8	N.D.	+0.3	-0.3
mixed community	RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x	+0.2	-3.4	N.D.	+0.2	-0.9
mixed community	RCH2_defined_noCarbon with Mixed culture; Pseudomonas simiae WCS417 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x	-0.1	-3.8	N.D.	+0.1	-0.1
rhizosphere	rhizosphere EcoFAB sample 3; outgrowth in LB	-0.2	-3.0	N.D.	-0.7	+0.2
mixed community	LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL	-0.2	-2.7	N.D.	-0.3	-0.6
nitrogen source	nitrate (N)	-0.2	-3.5	N.D.	+0.4	-0.3
supernatant	RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma virens G41 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1 x and 2,2'-Dipyridyl 50 uM	-0.2	-3.3	N.D.	+0.0	-0.3
stress	RCH2_defined_1percent_glucose with Chloride 100 mM and Betaine 100 uM	-0.2	-3.1	N.D.	-0.2	+0.0
mixed community	LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL	+0.1	-3.3	N.D.	-0.5	+0.2
mixed community	Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL	-0.1	-3.1	N.D.	-0.1	-0.1
stress	RCH2_defined_1percent_glucose with Chloride 400 mM	-0.0	-2.7	N.D.	-0.4	-0.3
stress	Fungal_growth_media_mCAFEs_v1 with Carbenicillin 0.008 mg/mL	+0.3	-3.5	N.D.	+0.0	+0.1
mixed community	LB 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL	+0.2	-2.6	N.D.	+0.0	-0.6
mixed community	Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL	+0.2	-3.0	N.D.	+0.3	-0.4
mixed community	LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL	+0.1	-2.5	N.D.	+0.2	-0.7
mixed community	LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL	+0.1	-2.9	N.D.	-0.5	+0.4
mixed community	LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL	+0.4	-2.6	N.D.	-0.1	-0.5
mixed community	LB 0.5x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL	+0.2	-3.1	N.D.	+0.0	+0.1
mixed community	LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL	+0.6	-3.7	N.D.	+0.3	+0.0
stress	Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL	+0.3	-3.1	N.D.	+0.1	+0.0
mixed community	Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL	+0.3	-2.3	N.D.	+0.1	-0.6
phage	KLEB1 MOI 10	+0.5	-2.4	N.D.	-0.3	-0.1
nitrogen source	L-tyrosine (N)	+0.2	-1.7	N.D.	+0.3	+1.1