Fitness for 5 genes in Klebsiella michiganensis M5al

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BWI76_RS12270	BWI76_RS12275	BWI76_RS12280	BWI76_RS12285	BWI76_RS12290
exudates	RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x	-1.8	-1.5	-0.9	-5.0	-0.6
mixed community	LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL	-2.5	-1.2	-1.4	-1.1	-1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-1.9	-1.5	-0.8	-1.7	-1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.8	-1.4	-0.2	-3.6	-1.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.9	-1.6	-2.6	-0.5	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.9	-0.8	-1.4	-1.3	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.4	-1.1	-0.1	-2.4	-0.9
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X	-1.6	-1.2	-0.9	-1.4	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.7	-1.7	-2.1	-0.3	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.3	-1.4	-1.0	-1.8	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.7	-0.9	-1.3	-0.9	-0.7
stress	Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL	-1.7	-1.2	-0.5	-1.0	-1.2
stress	Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM	-1.3	-1.4	-0.8	-1.2	-0.8
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-1.3	-1.6	-0.4	-0.7	-1.5
mixed community	LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL	-2.2	-1.3	-0.8	-0.4	-0.7
mixed community	Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL	-0.9	-1.1	-0.8	-1.5	-1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.0	-1.0	-1.1	-1.1	-1.1
mixed community	LB 0.5x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL	-1.1	-0.7	-1.2	-1.6	-0.6
mixed community	RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x	-1.5	-1.4	-0.4	-0.8	-1.2
mixed community	LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL	-1.6	-1.0	-0.4	-1.3	-0.9
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X	-1.4	-1.2	-0.6	-1.2	-0.8
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-1.2	-1.0	-1.4	-0.7	-0.8
supernatant control	Vogels_fungal_media 0.1X	-1.1	-1.1	-1.2	-0.6	-1.0
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-0.4	-1.3	-1.2	-0.5	-1.6
mixed community	Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL	-2.0	-1.2	-1.2	-0.0	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.6	-1.0	+0.3	-1.3	-0.8
stress	nitrite 40 mM	+0.4	+1.3	+0.8	+1.3	+1.3
stress	nitrite 20 mM	+0.7	+1.1	+1.4	+1.4	+0.7
carbon source	a-Cyclodextrin (C)	+1.4	+1.0	+1.4	+1.2	+1.6
carbon source	a-Cyclodextrin (C)	+1.5	+0.9	+2.0	+1.7	+1.2