Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS20170	BPHYT_RS20175	BPHYT_RS20180	BPHYT_RS20185	BPHYT_RS20190
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	N.D.	-1.4	-1.1	+0.0
tn7 efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50	-0.6	N.D.	-0.4	-2.1	+0.2
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	-0.1	N.D.	-0.4	-2.4	+0.3
phage	24hr PHYTO1 MOI 10	+0.0	N.D.	-0.4	-1.8	-0.2
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.1	N.D.	-0.6	-1.0	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.3	N.D.	-1.8	-0.4	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	N.D.	-1.2	-0.8	+0.2
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-0.6	N.D.	+0.2	-1.5	-0.2
phage	36hr PHYTO1 MOI 1	+0.2	N.D.	-0.8	-0.6	-0.6
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	+0.3	N.D.	+0.4	-1.8	-0.6
phage	36hr PHYTO10 MOI 10	+0.9	N.D.	+0.1	-2.4	-0.0
phage	24hr PHYTO3 MOI 10	+0.6	N.D.	-0.4	-1.6	+0.0
phage	36hr PHYTO6 MOI 1	-1.0	N.D.	+0.3	+0.3	-0.7
carbon source	Phenylacetic 5 mM (C)	-0.4	N.D.	-1.0	+1.3	-0.5
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	+0.3	N.D.	-1.1	+0.6	-0.2
nophagecontrol	36hr Phyto Lib only	+0.5	N.D.	-1.2	+0.3	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.0	N.D.	+0.6	+0.7	-0.2
phage	36hr PHYTO4 MOI 1	+0.9	N.D.	-0.5	+0.8	-0.1
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.6	N.D.	+0.3	+1.2	+0.2
phage	24hr PHYTO6 MOI 10	+1.0	N.D.	+0.3	-0.7	+0.4
phage	P. phyto PHYTO2 MOI 1	-0.5	N.D.	+0.6	+0.9	+0.3
phage	36hr PHYTO2 MOI 1	+0.9	N.D.	+0.2	+1.0	-0.4
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.4	N.D.	-0.3	+2.7	-0.2
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.4	N.D.	-0.3	+2.6	-0.2
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	+0.7	N.D.	-0.2	+1.0	+0.4
phage	24hr PHYTO4 MOI 0.1	+1.0	N.D.	+0.7	+0.4	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	N.D.	-0.0	+2.2	-0.2
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.2	N.D.	-0.6	+3.1	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	N.D.	+1.0	+1.7	-0.2
supernatant control	Vogels_fungal_media; pH 5.5	+0.9	N.D.	+0.9	+1.3	-0.1