Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS18975 and BPHYT_RS18980 overlap by 4 nucleotidesBPHYT_RS18980 and BPHYT_RS18985 overlap by 4 nucleotidesBPHYT_RS18985 and BPHYT_RS18990 are separated by 16 nucleotidesBPHYT_RS18990 and BPHYT_RS18995 are separated by 43 nucleotides BPHYT_RS18975: BPHYT_RS18975 - chemotaxis protein CheD, at 4,261,456 to 4,262,271 _RS18975 BPHYT_RS18980: BPHYT_RS18980 - chemotaxis protein CheR, at 4,262,268 to 4,263,224 _RS18980 BPHYT_RS18985: BPHYT_RS18985 - hypothetical protein, at 4,263,221 to 4,263,412 _RS18985 BPHYT_RS18990: BPHYT_RS18990 - chemotaxis protein, at 4,263,429 to 4,265,282 _RS18990 BPHYT_RS18995: BPHYT_RS18995 - purine-binding chemotaxis protein, at 4,265,326 to 4,265,862 _RS18995
Group Condition BPHYT_RS18975 BPHYT_RS18980 BPHYT_RS18985 BPHYT_RS18990 BPHYT_RS18995
motility outer cut, LB soft agar motility assay -1.6 -2.4 -2.0 -1.8 -3.7
motility outer cut, LB soft agar motility assay -0.9 -2.3 -1.6 -2.0 -3.6
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -0.9 -2.4 -0.9 -2.0 -3.1
motility inner cut, LB soft agar motility assay -1.1 -2.0 -1.7 -2.6 -1.8
motility outer cut, LB soft agar motility assay -1.2 -1.2 -1.3 -1.2 -2.2
motility inner cut, LB soft agar motility assay -0.5 -2.1 -0.8 -0.7 -2.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.2 -1.7 -0.8 -0.8 -1.8
motility inner cut, LB soft agar motility assay -0.8 -1.2 -1.0 -0.7 -2.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 -1.2 -1.4 -0.7 -2.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.9 -1.1 -1.2 -0.9 -1.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.7 -1.6 -0.6 -0.6 -1.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.0 -1.4 -0.7 -0.8 -1.3
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 -1.1 -1.1 -1.0 -1.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.7 -1.0 -0.9 -0.8 -1.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.3 -1.5 -1.2 -0.2 -1.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.7 -1.4 -0.7 -0.2 -1.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 -1.6 -0.5 -0.4 -1.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 -0.6 -0.2 -1.3 -1.0
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 -1.1 -0.8 -0.5 -0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days -0.1 -0.9 -0.7 -0.3 -1.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 -1.0 +0.0 -0.6 -1.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +0.2 -1.1 -0.7 +0.2 -1.4
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 -0.6 -0.5 -0.6 -1.0 -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 -0.9 -0.3 -1.0 -0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 -0.1 +0.2 -1.0 -0.6
phage P. phyto PHYTO2 MOI 1 -0.7 +0.2 -1.6 +0.1 -0.2
nitrogen source L-Serine (N) -0.5 +0.3 +0.2 -1.7 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.2 -0.0 -1.3 +0.9 -0.2
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -0.6 +0.4 +1.4 -0.2 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.9 -0.2 +0.3 +1.4 +0.1
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