Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS00105	BPHYT_RS00110	BPHYT_RS00115	BPHYT_RS00120	BPHYT_RS00125
nitrogen source	L-Lysine (N)	-0.5	-0.1	-2.4	-0.0	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	-0.6	-1.4	-1.1	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.2	-0.3	-1.3	-0.5	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	-0.1	+0.0	-2.8	+0.1	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.0	-0.9	-1.2	+0.1	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.4	-0.6	-2.2	+0.3	-0.3
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.0	-0.6	-0.8	-1.0	+0.2
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-0.2	-0.2	-0.3	-1.0	-0.3
carbon source	D-Glucose (C)	-0.2	-0.3	-1.4	+0.1	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.3	+0.0	-1.5	+0.1	-0.2
nitrogen source	L-Phenylalanine (N)	-0.2	+0.1	-1.0	-0.5	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	-1.2	+0.7	-0.6	-0.5
nitrogen source	L-Serine (N)	-0.2	-1.2	+0.2	-0.3	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days	-0.2	+0.2	-0.7	-0.7	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	+0.1	-1.8	-0.1	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	+0.3	-1.2	-0.3	-0.4
supernatant control	Vogels_fungal_media 0.1X	+0.6	-0.9	-0.5	-0.1	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.3	+0.1	-1.5	+0.4	+0.1
r2a control	R2A control	-0.3	-0.3	+1.0	-0.4	-0.3
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	+0.3	+0.7	-0.4	-0.6	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	-0.6	+0.9	+0.2	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.0	-0.2	+1.4	-0.3	-0.3
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.3	-0.6	+1.5	-0.3	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.0	-0.3	+1.4	+0.2	+0.2
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-0.3	+0.6	+1.3	-0.0	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	-0.2	+1.9	+0.3	-0.0
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.2	-0.4	+3.3	-0.3	-0.0
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.2	-0.4	+3.4	-0.1	-0.1
supernatant control	Vogels_fungal_media; pH 5.5	+0.6	+0.9	+0.6	+0.5	+0.0
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.1	+0.3	+3.5	-0.1	+0.2