Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu8153 and Atu1310 are separated by 357 nucleotidesAtu1310 and Atu1311 are separated by 140 nucleotidesAtu1311 and Atu1312 are separated by 63 nucleotidesAtu1312 and Atu8154 overlap by 4 nucleotides Atu8153: Atu8153 - hypothetical protein, at 1,301,458 to 1,301,889 Atu8153 Atu1310: Atu1310 - acyl-CoA dehydrogenase, at 1,302,247 to 1,303,899 Atu1310 Atu1311: Atu1311 - acetyltransferase, at 1,304,040 to 1,304,651 Atu1311 Atu1312: Atu1312 - hypothetical protein, at 1,304,715 to 1,305,011 Atu1312 Atu8154: Atu8154 - Plasmid stabilization system protein, at 1,305,008 to 1,305,382 Atu8154
Group Condition Atu8153 Atu1310 Atu1311 Atu1312 Atu8154
carbon source D-Glucosamine Hydrochloride (C) -0.2 N.D. -2.0 N.D. -0.1
nitrogen source DL-2-Aminobutyric (N) -0.7 N.D. -1.0 N.D. -0.6
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.7 N.D. -0.8 N.D. -0.4
carbon source D-Glucosamine Hydrochloride (C) -0.0 N.D. -1.5 N.D. -0.1
phage phage 100.3 -0.7 N.D. -0.5 N.D. -0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.1 N.D. -0.2 N.D. +0.2
phage AgroPhage_C10 +0.5 N.D. -1.3 N.D. -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 N.D. +0.5 N.D. -0.6
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.0 N.D. +0.4 N.D. -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.7 N.D. +0.4 N.D. -0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 N.D. +0.4 N.D. -0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.7 N.D. -0.3 N.D. -0.9
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.7 N.D. -0.6 N.D. -0.6
phage AgroPhage_A07 +0.7 N.D. -0.5 N.D. -0.6
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.6 N.D. +0.5 N.D. -1.5
phage AgroPhage_E10 +0.6 N.D. +0.3 N.D. -1.3
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.6 N.D. -0.3 N.D. -0.5
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 N.D. -0.7 N.D. +0.3
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.7 N.D. +0.1 N.D. +0.7
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 N.D. +0.6 N.D. -0.4
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 N.D. +1.1 N.D. -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 N.D. -0.1 N.D. +1.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.6 N.D. +1.6 N.D. +0.4
nophagecontrol No phage control +0.2 N.D. +0.4 N.D. +0.8
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.1 N.D. +1.1 N.D. +0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days +0.2 N.D. +1.0 N.D. +0.1
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 N.D. +0.8 N.D. +0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 N.D. +0.8 N.D. +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 N.D. +0.2 N.D. +1.2
stress R2A with tungstate 375 mM +1.9 N.D. +0.6 N.D. +0.0
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