Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS04285 and ABZR87_RS04290 are separated by 16 nucleotidesABZR87_RS04290 and ABZR87_RS04295 are separated by 633 nucleotidesABZR87_RS04295 and ABZR87_RS04300 are separated by 145 nucleotidesABZR87_RS04300 and ABZR87_RS04305 are separated by 112 nucleotides ABZR87_RS04285: ABZR87_RS04285 - sensor histidine kinase, at 893,093 to 894,766 _RS04285 ABZR87_RS04290: ABZR87_RS04290 - SET domain-containing protein-lysine N-methyltransferase, at 894,783 to 895,322 _RS04290 ABZR87_RS04295: ABZR87_RS04295 - HU family DNA-binding protein, at 895,956 to 896,234 _RS04295 ABZR87_RS04300: ABZR87_RS04300 - DUF2272 domain-containing protein, at 896,380 to 897,327 _RS04300 ABZR87_RS04305: ABZR87_RS04305 - class II aldolase/adducin family protein, at 897,440 to 898,264 _RS04305
Group Condition ABZR87_RS04285 ABZR87_RS04290 ABZR87_RS04295 ABZR87_RS04300 ABZR87_RS04305
carbon source Octanoic (C) -0.3 -1.6 -2.2 -0.4 -0.6
carbon source Sebacic (C) -0.5 -0.5 -4.0 -0.0 +0.2
carbon source Octanoic (C) +0.1 -1.5 -3.4 -0.2 +0.3
carbon source Azelaic (C) +0.0 -0.8 -2.5 -0.2 -0.0
carbon source Heptanoic (C) -0.1 -0.4 -2.7 -0.0 -0.1
micoeukaryotes Dictyostellum sp.mixed culture-2 -0.3 -0.0 -2.6 -0.2 -0.0
carbon source Heptanoic (C) -0.1 -0.2 -2.4 -0.1 -0.1
phage Ra1_0.1 +0.1 -0.2 -1.5 -0.3 -0.4
phage Ra1_0.01 +0.0 -0.1 -1.5 -0.2 -0.2
phage Ra3_1 -0.2 -0.4 -1.0 -0.2 -0.1
carbon source succinate (C) -0.3 -0.2 -1.1 -0.0 -0.2
micoeukaryotes C.elegans, mixed culture-2 -0.2 -0.1 -1.3 -0.1 +0.0
phage Ra3_0.1 +0.0 -0.1 -1.4 -0.0 -0.1
carbon source Dodecandioic (C) +0.2 -0.6 -0.6 +0.4 +0.1
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -0.0 +0.9 -0.4 -0.1 -0.2
carbon source Disodium Glutarate (C) -0.3 +0.9 -0.1 -0.1 -0.4
carbon source Hexanoic (C) -0.2 -0.5 +0.5 +0.2 +0.3
rhizosphere rhizosphere sample 3; outgrowth in LB +0.1 -0.2 +1.1 -0.2 -0.4
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.2 +1.0 -0.5 -0.1 -0.1
rhizosphere rhizosphere sample 4; outgrowth in LB -0.2 -0.4 +1.2 -0.1 -0.0
rhizosphere rhizosphere sample 8; outgrowth in LB -0.1 -0.5 +1.5 -0.1 +0.0
rhizosphere rhizosphere sample 7; outgrowth in LB +0.1 -0.4 +1.8 -0.2 -0.4
rhizosphere rhizosphere sample 5; outgrowth in LB +0.1 -0.3 +1.2 -0.1 +0.1
rhizosphere rhizosphere sample 6; outgrowth in LB -0.2 -0.2 +1.5 +0.0 +0.0
root root sample 6; outgrowth in LB +0.2 -0.4 +1.7 -0.3 +0.1
rhizosphere rhizosphere sample 9; outgrowth in LB -0.2 -0.3 +1.9 +0.2 -0.0
rhizosphere rhizosphere sample 1; outgrowth in LB +0.0 -0.4 +1.9 +0.0 -0.0
rhizosphere rhizosphere sample 2; outgrowth in LB +0.4 -0.2 +1.7 -0.1 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 -0.0 +1.0 +0.3 +0.2
root root sample 4; outgrowth in LB -0.3 -0.1 +1.9 +0.3 +0.4
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