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Protein
Homologs
Fitness for 5 genes in
Escherichia coli BW25113
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500 nt
yeaI and yeaJ are separated by 180 nucleotides
yeaJ and yeaK are separated by 42 nucleotides
yeaK and b1788 are separated by 0 nucleotides
b1788 and yeaL are separated by 169 nucleotides
b1785: yeaI - predicted diguanylate cyclase (NCBI), at 1,868,409 to 1,869,884
yeaI
b1786: yeaJ - orf, hypothetical protein (VIMSS), at 1,870,065 to 1,871,555
yeaJ
b1787: yeaK - hypothetical protein (NCBI), at 1,871,598 to 1,872,101
yeaK
b1788: b1788 - orf, hypothetical protein (VIMSS), at 1,872,102 to 1,872,206
b1788
b1789: yeaL - conserved inner membrane protein (NCBI), at 1,872,376 to 1,872,822
yeaL
Group
Condition
b1785
b1786
b1787
b1788
b1789
yeaI
yeaJ
yeaK
b1788
yeaL
carbon source
D-Galacturonic Acid (C) M9
-0.1
+0.1
-0.5
N.D.
-2.8
carbon source
D-Galacturonic Acid (C) MOPS
-0.0
-0.0
-0.1
N.D.
-3.1
plasmid transformation
vcDART vector transformation; liquid outgrowth assay
-0.7
+0.0
-0.5
N.D.
-1.4
phage
T7_phage 0.0015625 MOI TC2
+0.4
+0.2
-0.2
N.D.
-1.6
control
PBS_cage_2_mouse_1_Cecum_40 hr
-1.5
-0.1
-0.6
N.D.
+1.0
carbon source
carbon source D-Glucose 0.25mM
-1.7
-0.1
-0.4
N.D.
+1.1
phage
Ste41
+0.9
-0.2
-0.8
N.D.
+0.5
phage
Ste41
+1.3
-0.5
-1.2
N.D.
+0.9
phage
R2_N4_T2_phage10
-0.8
+0.5
-0.1
N.D.
+1.3
motility
inner cut, LB soft agar motility assay
-0.6
+0.1
+0.2
N.D.
+1.4
phage
Goslar
-0.9
+2.2
-0.1
N.D.
+0.1
phage
Goslar
-0.4
+2.0
+0.0
N.D.
-0.2
phage
R1_N4_T2_phage8
-0.4
+1.8
+0.6
N.D.
-0.2
control
PBS_cage_1_mouse_1_Cecum_40 hr
+1.9
-0.1
+0.6
N.D.
-0.1
phage
Papa dilution 10-1 cacl2 maltose
+1.2
+1.1
+0.0
N.D.
-0.0
phage
TP15
-0.0
+2.3
+0.1
N.D.
-0.0
stress
Trimethoprim 0.005 mM
+2.2
+0.2
+0.7
N.D.
+0.3
phage
N4_phage 0.09375 MOI TC1
+1.1
+4.0
+0.1
N.D.
-1.5
phage
N4_phage 0.00009375 MOI TC1
-0.3
+3.6
+0.3
N.D.
+0.1
phage
No phage control ML9a
-0.6
+4.0
+0.3
N.D.
+0.3
phage
LB_plus_SM_buffer
-0.4
+4.7
-0.0
N.D.
-0.0
phage
N4_phage 0.00009375 MOI TC3
+0.3
+4.9
+0.0
N.D.
-0.7
phage
N4_phage 0.009375 MOI TC1
+0.6
+5.5
-0.7
N.D.
-0.6
phage
N4_phage 0.00009375 MOI TC5
+0.5
+6.0
-0.2
N.D.
-0.6
phage
N4_phage 0.0009375 MOI TC3
+1.1
+6.8
-0.0
N.D.
-1.1
phage
N4_phage 0.0009375 MOI TC2
+0.7
+6.5
-0.1
N.D.
-0.2
phage
N4_phage 0.00009375 MOI TC4
+0.8
+7.3
+0.3
N.D.
-0.7
ms2_1000_b3
MS2_1000_B3
+0.3
+7.4
+0.3
N.D.
-0.1
ms2_1000_a3
MS2_1000_A3
+0.6
+8.1
+0.1
N.D.
+0.0
phage
N4_phage 0.009375 MOI TC2
+2.2
+7.5
-0.3
N.D.
-0.0
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