Experiment set9S158 for Phocaeicola vulgatus CL09T03C04

Compare to:

Red Arabinan from sugar-beet; filtered 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS14565 -6.8 -9.3 3-isopropylmalate dehydrogenase compare
HMPREF1058_RS12115 -6.3 -10.5 acetylglutamate kinase compare
HMPREF1058_RS09675 -6.2 -5.7 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS08850 -6.2 -7.4 N-acetyltransferase compare
HMPREF1058_RS14725 -5.9 -10.6 cofactor-independent phosphoglycerate mutase compare
HMPREF1058_RS12105 -5.9 -7.0 shikimate kinase compare
HMPREF1058_RS09585 -5.6 -18.5 argininosuccinate lyase compare
HMPREF1058_RS08645 -5.5 -11.3 glutamate-5-semialdehyde dehydrogenase compare
HMPREF1058_RS06180 -5.5 -5.4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HMPREF1058_RS15870 -5.5 -6.6 ATP phosphoribosyltransferase compare
HMPREF1058_RS08840 -5.5 -11.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1058_RS07170 -5.5 -9.9 tryptophan synthase subunit beta compare
HMPREF1058_RS10080 -5.4 -16.6 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1058_RS07185 -5.4 -10.3 anthranilate phosphoribosyltransferase compare
HMPREF1058_RS15435 -5.3 -5.2 hypothetical protein compare
HMPREF1058_RS14730 -5.3 -10.1 threonine synthase compare
HMPREF1058_RS14785 -5.2 -8.0 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1058_RS08845 -5.2 -11.1 argininosuccinate synthase compare
HMPREF1058_RS14550 -5.2 -11.7 3-isopropylmalate dehydratase large subunit compare
HMPREF1058_RS12780 -5.2 -12.1 M20 family metallo-hydrolase compare
HMPREF1058_RS15640 -5.2 -8.0 L-ribulose-5-phosphate 4-epimerase compare
HMPREF1058_RS14720 -5.2 -15.4 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HMPREF1058_RS15875 -5.2 -7.9 histidinol dehydrogenase compare
HMPREF1058_RS14920 -5.1 -11.3 serine dehydratase subunit alpha family protein compare
HMPREF1058_RS03000 -5.0 -9.6 IMP dehydrogenase compare
HMPREF1058_RS10075 -5.0 -16.3 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1058_RS14215 -5.0 -3.4 (d)CMP kinase compare
HMPREF1058_RS08650 -5.0 -12.0 glutamate 5-kinase compare
HMPREF1058_RS14560 -5.0 -12.0 2-isopropylmalate synthase compare
HMPREF1058_RS14545 -5.0 -11.0 2-isopropylmalate synthase compare
HMPREF1058_RS11270 -4.9 -11.5 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS15885 -4.9 -8.8 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HMPREF1058_RS07175 -4.9 -10.4 anthranilate synthase component I family protein compare
HMPREF1058_RS07195 -4.9 -4.5 phosphoribosylanthranilate isomerase compare
HMPREF1058_RS08025 -4.9 -6.6 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS10840 -4.8 -3.2 hypothetical protein compare
HMPREF1058_RS14610 -4.8 -15.3 adenylosuccinate synthase compare
HMPREF1058_RS14790 -4.8 -14.0 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS07190 -4.8 -7.9 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1058_RS08640 -4.8 -3.9 acetylornithine carbamoyltransferase compare
HMPREF1058_RS10995 -4.8 -7.9 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS12490 -4.7 -3.2 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS13970 -4.7 -3.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS08830 -4.7 -9.5 pyrroline-5-carboxylate reductase compare
HMPREF1058_RS07180 -4.7 -3.2 aminodeoxychorismate/anthranilate synthase component II compare
HMPREF1058_RS06170 -4.7 -7.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
HMPREF1058_RS01685 -4.6 -3.2 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
HMPREF1058_RS07200 -4.6 -10.0 tryptophan synthase subunit alpha compare
HMPREF1058_RS09610 -4.6 -8.7 peptide chain release factor N(5)-glutamine methyltransferase compare
HMPREF1058_RS15880 -4.5 -11.5 histidinol-phosphate transaminase compare
HMPREF1058_RS07955 -4.5 -13.5 phosphoribosylformylglycinamidine synthase compare
HMPREF1058_RS16255 -4.4 -11.4 isochorismate synthase compare
HMPREF1058_RS14770 -4.4 -9.4 prephenate dehydrogenase compare
HMPREF1058_RS15635 -4.4 -16.3 L-arabinose isomerase compare
HMPREF1058_RS16760 -4.4 -3.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1058_RS04295 -4.4 -3.0 3-phosphoglycerate dehydrogenase compare
HMPREF1058_RS16835 -4.4 -7.3 ketol-acid reductoisomerase compare
HMPREF1058_RS09685 -4.4 -12.6 tetratricopeptide repeat protein compare
HMPREF1058_RS16820 -4.4 -7.8 biosynthetic-type acetolactate synthase large subunit compare
HMPREF1058_RS14555 -4.4 -2.8 3-isopropylmalate dehydratase small subunit compare
HMPREF1058_RS02405 -4.3 -20.6 methylmalonyl-CoA mutase small subunit compare
HMPREF1058_RS08535 -4.3 -4.2 elongation factor P compare
HMPREF1058_RS16815 -4.3 -11.1 dihydroxy-acid dehydratase compare
HMPREF1058_RS11040 -4.3 -6.5 polysaccharide deacetylase family protein compare
HMPREF1058_RS06175 -4.2 -5.0 imidazole glycerol phosphate synthase subunit HisF compare
HMPREF1058_RS02410 -4.2 -18.3 methylmalonyl-CoA mutase compare
HMPREF1058_RS14795 -4.1 -7.9 prephenate dehydratase compare
HMPREF1058_RS00590 -4.1 -4.0 hypothetical protein compare
HMPREF1058_RS15075 -4.1 -12.8 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1058_RS10820 -4.1 -18.8 4-phosphoerythronate dehydrogenase PdxB compare
HMPREF1058_RS16730 -4.1 -2.8 chorismate synthase compare
HMPREF1058_RS15655 -4.0 -12.1 galactose mutarotase compare
HMPREF1058_RS15630 -4.0 -14.1 FGGY-family carbohydrate kinase compare
HMPREF1058_RS00700 -4.0 -11.7 DUF4831 family protein compare
HMPREF1058_RS07655 -4.0 -1.8 hypothetical protein compare
HMPREF1058_RS13795 -3.9 -11.0 DUF4954 family protein compare
HMPREF1058_RS17035 -3.9 -7.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HMPREF1058_RS08835 -3.9 -9.1 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS10720 -3.9 -9.9 GH3 auxin-responsive promoter family protein compare
HMPREF1058_RS16825 -3.8 -6.3 acetolactate synthase small subunit compare
HMPREF1058_RS08875 -3.8 -12.7 rhamnulose-1-phosphate aldolase compare
HMPREF1058_RS02170 -3.8 -5.8 hypothetical protein compare
HMPREF1058_RS03800 -3.8 -8.5 serine hydroxymethyltransferase compare
HMPREF1058_RS13730 -3.8 -3.7 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
HMPREF1058_RS15650 -3.8 -11.9 sodium:solute symporter compare
HMPREF1058_RS02975 -3.8 -1.9 hypothetical protein compare
HMPREF1058_RS12110 -3.8 -13.1 biosynthetic arginine decarboxylase compare
HMPREF1058_RS06195 -3.8 -5.7 diaminopimelate decarboxylase compare
HMPREF1058_RS13910 -3.7 -4.8 nucleoside deaminase compare
HMPREF1058_RS09745 -3.7 -7.8 glycosyltransferase compare
HMPREF1058_RS11490 -3.7 -4.3 redox-regulated ATPase YchF compare
HMPREF1058_RS17815 -3.7 -4.3 MFS transporter compare
HMPREF1058_RS08855 -3.6 -7.2 arginine repressor compare
HMPREF1058_RS04375 -3.6 -7.7 carbon-nitrogen hydrolase compare
HMPREF1058_RS06190 -3.6 -5.5 aspartate kinase compare
HMPREF1058_RS07440 -3.6 -8.6 aspartate--ammonia ligase compare
HMPREF1058_RS14220 -3.5 -4.8 energy transducer TonB compare
HMPREF1058_RS10835 -3.5 -6.6 UDP-galactopyranose mutase compare
HMPREF1058_RS14490 -3.5 -10.7 S9 family peptidase compare
HMPREF1058_RS06165 -3.5 -8.5 imidazole glycerol phosphate synthase subunit HisH compare
HMPREF1058_RS03295 -3.5 -1.6 sulfur carrier protein ThiS compare
HMPREF1058_RS00560 -3.5 -2.4 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1058_RS13655 -3.5 -14.1 cardiolipin synthase compare
HMPREF1058_RS03510 -3.5 -5.3 YebC/PmpR family DNA-binding transcriptional regulator compare
HMPREF1058_RS17080 -3.5 -2.6 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS08325 -3.5 -5.0 pyridoxine 5'-phosphate synthase compare
HMPREF1058_RS02800 -3.4 -7.2 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS16250 -3.4 -10.4 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase compare
HMPREF1058_RS06310 -3.4 -6.1 UDP-glucose 4-epimerase GalE compare
HMPREF1058_RS12505 -3.4 -6.5 RNA polymerase factor sigma-54 compare
HMPREF1058_RS02220 -3.4 -3.3 branched-chain amino acid aminotransferase compare
HMPREF1058_RS06225 -3.4 -2.3 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1058_RS05780 -3.4 -8.1 PD40 domain-containing protein compare
HMPREF1058_RS04300 -3.4 -4.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1058_RS06560 -3.3 -7.3 carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1058_RS03970 -3.3 -3.2 dihydroorotate dehydrogenase electron transfer subunit compare
HMPREF1058_RS02755 -3.3 -3.2 translocation/assembly module TamB domain-containing protein compare
HMPREF1058_RS08060 -3.3 -7.8 hypothetical protein compare
HMPREF1058_RS16260 -3.2 -6.0 hotdog fold thioesterase compare
HMPREF1058_RS16505 -3.2 -2.2 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS10850 -3.2 -10.2 glycosyltransferase family 2 protein compare
HMPREF1058_RS16750 -3.2 -2.2 shikimate dehydrogenase compare
HMPREF1058_RS16500 -3.1 -3.7 OadG family protein compare
HMPREF1058_RS15565 -3.1 -16.5 hypothetical protein compare
HMPREF1058_RS05755 -3.1 -9.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
HMPREF1058_RS17775 -3.1 -5.1 hypothetical protein compare
HMPREF1058_RS17050 -3.1 -9.0 CDP-alcohol phosphatidyltransferase family protein compare
HMPREF1058_RS06330 -3.1 -4.6 RnfABCDGE type electron transport complex subunit G compare
HMPREF1058_RS03290 -3.1 -3.8 thiamine phosphate synthase compare
HMPREF1058_RS07840 -3.0 -3.6 hypothetical protein compare
HMPREF1058_RS09590 -3.0 -7.4 hypothetical protein compare
HMPREF1058_RS17060 -3.0 -7.4 HAD family hydrolase compare
HMPREF1058_RS11730 -3.0 -2.3 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS17155 -3.0 -4.0 dCMP deaminase family protein compare
HMPREF1058_RS10560 -3.0 -18.9 arabinan endo-1,5-alpha-L-arabinosidase compare
HMPREF1058_RS07040 -2.9 -12.8 tetratricopeptide repeat protein compare
HMPREF1058_RS16510 -2.9 -4.0 methylmalonyl-CoA epimerase compare
HMPREF1058_RS03085 -2.9 -2.0 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HMPREF1058_RS14930 -2.8 -10.6 AraC family transcriptional regulator compare
HMPREF1058_RS11625 -2.8 -14.2 S41 family peptidase compare
HMPREF1058_RS01690 -2.8 -7.2 sugar kinase compare
HMPREF1058_RS06340 -2.8 -4.6 electron transport complex subunit RsxC compare
HMPREF1058_RS18400 -2.8 -6.8 RidA family protein compare
HMPREF1058_RS01650 -2.8 -4.9 hypothetical protein compare
HMPREF1058_RS00565 -2.8 -11.2 hemolysin III family protein compare
HMPREF1058_RS11535 -2.8 -7.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HMPREF1058_RS09750 -2.7 -4.1 glycosyltransferase compare
HMPREF1058_RS02750 -2.7 -4.5 BamA/TamA family outer membrane protein compare
HMPREF1058_RS04045 -2.7 -2.6 tetratricopeptide repeat protein compare
HMPREF1058_RS14035 -2.7 -1.8 hypothetical protein compare
HMPREF1058_RS14200 -2.6 -11.7 methylmalonyl Co-A mutase-associated GTPase MeaB compare
HMPREF1058_RS15395 -2.6 -2.5 dihydroorotase compare
HMPREF1058_RS16495 -2.6 -1.8 biotin/lipoyl-binding protein compare
HMPREF1058_RS12070 -2.6 -4.7 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS03285 -2.6 -7.6 thiazole synthase compare
HMPREF1058_RS01745 -2.6 -3.0 PorT family protein compare
HMPREF1058_RS16755 -2.5 -3.3 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
HMPREF1058_RS06335 -2.5 -6.7 RnfABCDGE type electron transport complex subunit D compare
HMPREF1058_RS11915 -2.5 -2.0 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS17040 -2.5 -5.6 NTP transferase domain-containing protein compare
HMPREF1058_RS14005 -2.5 -3.3 3-dehydroquinate synthase compare
HMPREF1058_RS04070 -2.5 -1.7 hypothetical protein compare
HMPREF1058_RS08520 -2.4 -4.0 DUF59 domain-containing protein compare
HMPREF1058_RS10970 -2.4 -9.7 ribonuclease R compare
HMPREF1058_RS16845 -2.4 -3.3 SurA N-terminal domain-containing protein compare
HMPREF1058_RS04065 -2.4 -1.4 VWA domain-containing protein compare
HMPREF1058_RS15265 -2.4 -3.6 queuosine precursor transporter compare
HMPREF1058_RS01265 -2.4 -2.8 FHA domain-containing protein compare
HMPREF1058_RS04025 -2.4 -7.3 hypothetical protein compare
HMPREF1058_RS01705 -2.4 -2.2 Na+/H+ antiporter NhaC family protein compare
HMPREF1058_RS17940 -2.3 -7.7 alpha-amylase compare
HMPREF1058_RS01700 -2.3 -7.2 altronate dehydratase compare
HMPREF1058_RS15660 -2.3 -10.5 galactokinase compare
HMPREF1058_RS06350 -2.3 -5.0 SoxR reducing system RseC family protein compare
HMPREF1058_RS17955 -2.3 -7.2 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
HMPREF1058_RS17205 -2.3 -2.2 DUF4199 domain-containing protein compare
HMPREF1058_RS11310 -2.3 -5.3 undecaprenyl-diphosphate phosphatase compare
HMPREF1058_RS13735 -2.3 -3.4 hypothetical protein compare
HMPREF1058_RS14605 -2.2 -6.1 transcriptional repressor compare
HMPREF1058_RS06160 -2.2 -5.7 formyltetrahydrofolate deformylase compare
HMPREF1058_RS02115 -2.2 -12.1 NADP-specific glutamate dehydrogenase compare
HMPREF1058_RS06600 -2.2 -2.1 DedA family protein compare
HMPREF1058_RS03265 -2.2 -9.8 2-iminoacetate synthase ThiH compare
HMPREF1058_RS04580 -2.2 -2.1 hypothetical protein compare
HMPREF1058_RS17975 -2.2 -8.1 ATP-dependent dethiobiotin synthetase BioD compare
HMPREF1058_RS09000 -2.2 -6.3 FecR domain-containing protein compare
HMPREF1058_RS06820 -2.2 -9.5 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
HMPREF1058_RS03075 -2.2 -4.5 DNA helicase RecQ compare
HMPREF1058_RS06410 -2.2 -2.1 elongation factor 4 compare
HMPREF1058_RS06325 -2.2 -3.8 electron transport complex subunit E compare
HMPREF1058_RS01585 -2.2 -7.4 tagaturonate reductase compare
HMPREF1058_RS17045 -2.1 -4.4 hypothetical protein compare
HMPREF1058_RS11815 -2.1 -6.9 tRNA 2-thiouridine(34) synthase MnmA compare
HMPREF1058_RS01405 -2.1 -6.7 cobyrinate a,c-diamide synthase compare
HMPREF1058_RS17950 -2.1 -6.1 biotin synthase BioB compare
HMPREF1058_RS03260 -2.1 -9.6 HesA/MoeB/ThiF family protein compare
HMPREF1058_RS10550 -2.1 -12.1 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS10255 -2.1 -3.3 hypothetical protein compare
HMPREF1058_RS17885 -2.1 -13.3 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
HMPREF1058_RS05925 -2.1 -2.3 DUF5024 domain-containing protein compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source Red Arabinan from sugar-beet in Phocaeicola vulgatus CL09T03C04

For carbon source Red Arabinan from sugar-beet across organisms