Experiment set9S129 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Xylemvessel barcodes Location 3 4 dpi (25 plantes)

200 most detrimental genes:

  gene name fitness t score description  
Xcc-8004.2900.1 +4.4 14.9 response regulator compare
Xcc-8004.624.1 +4.2 13.7 Cyclic AMP receptor protein compare
Xcc-8004.2898.1 +3.9 16.8 Sensory/regulatory protein rpfC (EC 2.7.3.-) compare
Xcc-8004.3806.1 +3.0 10.1 HrpX protein compare
Xcc-8004.2799.1 +3.0 17.9 response regulator compare
Xcc-8004.3809.1 +2.9 9.1 HrpG protein compare
Xcc-8004.299.1 +2.5 1.7 Acyltransferase compare
Xcc-8004.4210.1 +2.0 7.0 Thymidine phosphorylase (EC 2.4.2.4) compare
Xcc-8004.3733.1 +2.0 2.5 Type III secretion inner membrane protein (YscQ,homologous to flagellar export components) compare
Xcc-8004.3903.1 +1.9 2.0 Mlr6856 protein compare
Xcc-8004.1858.1 +1.9 2.2 FIG01211170: hypothetical protein compare
Xcc-8004.1790.1 +1.9 5.3 Zinc uptake regulation protein ZUR compare
Xcc-8004.3512.1 +1.7 3.7 Transcription repressor of tripartite multidrug resistance system compare
Xcc-8004.3722.1 +1.7 1.8 HrpB7 protein compare
Xcc-8004.288.1 +1.6 1.5 Ferredoxin compare
Xcc-8004.3304.1 +1.5 0.9 FIG01211108: hypothetical protein compare
Xcc-8004.5168.1 +1.5 2.2 hypothetical protein compare
Xcc-8004.3451.1 +1.5 2.1 hypothetical protein compare
Xcc-8004.873.1 +1.5 1.5 S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) compare
Xcc-8004.1200.1 +1.5 1.6 hypothetical protein compare
Xcc-8004.778.1 +1.5 2.3 FIG01214273: hypothetical protein compare
Xcc-8004.2823.1 +1.5 7.3 Flagellar biosynthesis protein FliR compare
Xcc-8004.998.1 +1.5 2.0 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3162.1 +1.5 3.8 FIG01211092: hypothetical protein compare
Xcc-8004.1362.1 +1.4 3.7 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) compare
Xcc-8004.4982.1 +1.4 1.3 Protein yjbJ compare
Xcc-8004.1809.1 +1.4 1.4 extracellular serine protease compare
Xcc-8004.2768.1 +1.4 6.0 hypothetical protein compare
Xcc-8004.5161.1 +1.4 1.8 FIG01212148: hypothetical protein compare
Xcc-8004.3498.1 +1.3 1.3 hypothetical protein compare
Xcc-8004.1688.1 +1.3 2.0 Thiamin biosynthesis lipoprotein ApbE compare
Xcc-8004.4250.1 +1.3 1.5 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Xcc-8004.2772.1 +1.2 6.5 Histidine kinase compare
Xcc-8004.585.1 +1.2 1.7 Na(+) H(+) antiporter subunit F compare
Xcc-8004.4913.1 +1.2 3.7 Nitrogen regulatory protein P-II compare
Xcc-8004.781.1 +1.2 2.5 inner membrane protein compare
Xcc-8004.4693.1 +1.2 2.2 hypothetical protein compare
Xcc-8004.4001.1 +1.2 2.0 FIG146278: Maf/YceF/YhdE family protein compare
Xcc-8004.94.1 +1.2 1.0 Transcriptional regulator, LuxR family compare
Xcc-8004.543.1 +1.2 2.4 FIG01210004: hypothetical protein compare
Xcc-8004.482.1 +1.2 1.3 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) compare
Xcc-8004.787.1 +1.1 1.1 Rrf2 family transcriptional regulator, group III compare
Xcc-8004.1891.1 +1.1 1.6 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) compare
Xcc-8004.4833.1 +1.1 2.1 FIG01111678: hypothetical protein compare
Xcc-8004.3775.1 +1.1 2.1 FIG001154: CcsA-related protein compare
Xcc-8004.1848.1 +1.1 2.1 Ribonuclease E inhibitor RraA compare
Xcc-8004.1720.1 +1.1 1.7 UPF0301 protein YqgE compare
Xcc-8004.3666.1 +1.1 2.3 2-hydroxychromene-2-carboxylate isomerase/DsbA-like thioredoxin domain compare
Xcc-8004.2646.1 +1.1 3.5 hypothetical protein compare
Xcc-8004.4326.1 +1.1 1.9 phosphoglycerate mutase compare
Xcc-8004.986.1 +1.1 1.8 hypothetical protein compare
Xcc-8004.1568.1 +1.1 1.2 Glycine cleavage system H protein compare
Xcc-8004.4561.1 +1.0 1.4 Sensor histidine kinase compare
Xcc-8004.1906.1 +1.0 2.3 lipoprotein compare
Xcc-8004.4884.1 +1.0 2.0 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
Xcc-8004.4100.1 +1.0 2.5 hypothetical protein compare
Xcc-8004.2475.1 +1.0 1.3 Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) compare
Xcc-8004.4691.1 +1.0 2.1 hypothetical protein compare
Xcc-8004.4951.1 +1.0 1.2 FIG01210986: hypothetical protein compare
Xcc-8004.5046.1 +1.0 3.0 Phenol hydroxylase compare
Xcc-8004.1849.1 +0.9 2.6 Beta-lactamase (EC 3.5.2.6) compare
Xcc-8004.1822.1 +0.9 2.4 Transcriptional regulator, MarR family compare
Xcc-8004.5335.1 +0.9 0.8 FIG01214241: hypothetical protein compare
Xcc-8004.1328.1 +0.9 1.4 FIG01210090: hypothetical protein compare
Xcc-8004.5321.1 +0.9 2.5 FIG01213140: hypothetical protein compare
Xcc-8004.1610.1 +0.9 1.2 MFS transporter compare
Xcc-8004.924.1 +0.9 0.7 FIG01200701: possible membrane protein compare
Xcc-8004.3212.1 +0.9 2.1 phage-related integrase compare
Xcc-8004.1684.1 +0.9 2.4 DNA transport competence protein compare
Xcc-8004.3208.1 +0.9 0.6 Methyltransferase type 12 compare
Xcc-8004.3222.1 +0.9 1.7 Mobile element protein compare
Xcc-8004.1003.1 +0.9 1.4 FIG027190: Putative transmembrane protein compare
Xcc-8004.4635.1 +0.9 1.9 hypothetical protein compare
Xcc-8004.3041.1 +0.9 1.8 Dna binding response regulator PrrA (RegA) compare
Xcc-8004.4694.1 +0.9 1.4 FIG01210824: hypothetical protein compare
Xcc-8004.3087.1 +0.9 2.3 FIG01211583: hypothetical protein compare
Xcc-8004.2213.1 +0.9 1.1 FIG01210598: hypothetical protein compare
Xcc-8004.3848.1 +0.9 1.6 FIG01212003: hypothetical protein compare
Xcc-8004.2563.1 +0.9 1.5 FIG01210540: hypothetical protein compare
Xcc-8004.1764.1 +0.9 2.3 FIG01209971: hypothetical protein compare
Xcc-8004.2401.1 +0.9 0.9 FIG00545367: hypothetical protein compare
Xcc-8004.2131.1 +0.9 1.4 Predicted 4-hydroxyproline dipeptidase compare
Xcc-8004.1075.1 +0.9 3.1 FIG01210920: hypothetical protein compare
Xcc-8004.788.1 +0.9 1.3 Serine peptidase compare
Xcc-8004.3402.1 +0.8 1.9 FIG01210246: hypothetical protein compare
Xcc-8004.4423.1 +0.8 0.4 General secretion pathway protein N compare
Xcc-8004.3182.1 +0.8 4.0 FIG01211823: hypothetical protein compare
Xcc-8004.673.1 +0.8 3.5 Transcriptional regulator pbsX family compare
Xcc-8004.500.1 +0.8 1.6 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Xcc-8004.869.1 +0.8 1.9 Methanol dehydrogenase large subunit protein (EC 1.1.99.8) compare
Xcc-8004.2958.1 +0.8 1.6 tryptophan-rich sensory protein compare
Xcc-8004.4602.1 +0.8 1.6 Methionine ABC transporter permease protein compare
Xcc-8004.919.1 +0.8 3.1 Nicotinamide phosphoribosyltransferase (EC 2.4.2.12) compare
Xcc-8004.1523.1 +0.8 4.0 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) compare
Xcc-8004.4545.1 +0.8 2.8 Lactoylglutathione lyase (EC 4.4.1.5) compare
Xcc-8004.293.1 +0.8 3.9 hypothetical protein compare
Xcc-8004.970.1 +0.8 1.7 Probable cytochrome c2 compare
Xcc-8004.713.1 +0.8 1.0 FIG01210186: hypothetical protein compare
Xcc-8004.3188.1 +0.8 1.4 Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE compare
Xcc-8004.1825.1 +0.8 2.3 FIG01210006: hypothetical protein compare
Xcc-8004.1223.1 +0.8 0.9 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) compare
Xcc-8004.638.1 +0.8 3.5 Bacterioferritin compare
Xcc-8004.2091.1 +0.8 2.5 Xanthan biosynthesis pyruvyltransferase GumL compare
Xcc-8004.1220.1 +0.8 2.0 Protein YicC compare
Xcc-8004.718.1 +0.8 0.7 hypothetical protein compare
Xcc-8004.854.1 +0.8 1.4 Cytosine deaminase (EC 3.5.4.1) compare
Xcc-8004.2867.1 +0.8 0.9 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.4525.1 +0.8 2.6 Maleylacetoacetate isomerase (EC 5.2.1.2) @ Glutathione S-transferase, zeta (EC 2.5.1.18) compare
Xcc-8004.3292.1 +0.8 1.9 FIG01210333: hypothetical protein compare
Xcc-8004.5035.1 +0.8 3.9 Tryptophan halogenase compare
Xcc-8004.1826.1 +0.8 1.5 FIG01217340: hypothetical protein compare
Xcc-8004.350.1 +0.8 1.1 hypothetical protein compare
Xcc-8004.703.1 +0.8 0.9 hypothetical protein compare
Xcc-8004.894.1 +0.8 2.0 hypothetical protein compare
Xcc-8004.5030.1 +0.7 4.1 Glutathione S-transferase (EC 2.5.1.18) compare
Xcc-8004.1726.1 +0.7 2.8 Phenazine biosynthesis protein PhzF like compare
Xcc-8004.3332.1 +0.7 2.3 Spermidine synthase (EC 2.5.1.16) compare
Xcc-8004.1749.1 +0.7 2.5 FIG01212324: hypothetical protein compare
Xcc-8004.916.1 +0.7 1.4 transcriptional regulator compare
Xcc-8004.3983.1 +0.7 1.9 FIG01212198: hypothetical protein compare
Xcc-8004.410.1 +0.7 0.5 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.312.1 +0.7 2.2 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Xcc-8004.3846.1 +0.7 1.3 Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) compare
Xcc-8004.2266.1 +0.7 1.6 FIG01211351: hypothetical protein compare
Xcc-8004.898.1 +0.7 1.5 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1896.1 +0.7 1.2 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.2627.1 +0.7 0.8 Phi-Lf prophage-derived helix-destabilizing protein compare
Xcc-8004.4409.1 +0.7 1.4 FIG01211368: hypothetical protein compare
Xcc-8004.876.1 +0.7 1.1 Mobile element protein compare
Xcc-8004.2167.1 +0.7 2.0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Xcc-8004.770.1 +0.7 1.4 hypothetical protein compare
Xcc-8004.340.1 +0.7 1.0 Organic hydroperoxide resistance protein compare
Xcc-8004.5135.1 +0.7 2.6 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Xcc-8004.1226.1 +0.7 1.0 FIG01210021: hypothetical protein compare
Xcc-8004.1495.1 +0.7 1.3 FIG01212489: hypothetical protein compare
Xcc-8004.2610.1 +0.7 2.6 FIG01211014: hypothetical protein compare
Xcc-8004.4947.1 +0.7 1.1 Histone H1 compare
Xcc-8004.1172.1 +0.7 1.5 Transcriptional regulator compare
Xcc-8004.4871.1 +0.7 0.6 Phage tail completion protein compare
Xcc-8004.4821.1 +0.7 1.4 FIG01209726: hypothetical protein compare
Xcc-8004.4801.1 +0.7 1.7 FIG01211532: hypothetical protein compare
Xcc-8004.3629.1 +0.7 1.8 Cation transport protein compare
Xcc-8004.4707.1 +0.7 2.0 Transcriptional regulator, LysR family compare
Xcc-8004.2699.1 +0.7 3.1 Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) compare
Xcc-8004.4665.1 +0.7 1.1 FIG01211765: hypothetical protein compare
Xcc-8004.2166.1 +0.7 2.5 Transcriptional regulator, AsnC family compare
Xcc-8004.111.1 +0.7 0.9 FIG01211861: hypothetical protein compare
Xcc-8004.4669.1 +0.6 3.3 Transcriptional regulator NtrC family compare
Xcc-8004.3832.1 +0.6 1.4 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Xcc-8004.21.1 +0.6 1.9 FIG01212315: hypothetical protein compare
Xcc-8004.253.1 +0.6 1.9 IcmF-related protein compare
Xcc-8004.5036.1 +0.6 2.6 Ferric siderophore transport system, periplasmic binding protein TonB compare
Xcc-8004.1505.1 +0.6 1.8 pilus biogenesis protein compare
Xcc-8004.3228.1 +0.6 1.6 hypothetical protein compare
Xcc-8004.5231.1 +0.6 1.1 hypothetical protein compare
Xcc-8004.3798.1 +0.6 1.3 Anti-sigma B factor RsbT compare
Xcc-8004.5052.1 +0.6 1.1 FIG01209941: hypothetical protein compare
Xcc-8004.5201.1 +0.6 1.5 FIG01211164: hypothetical protein compare
Xcc-8004.559.1 +0.6 1.3 FIG01213048: hypothetical protein compare
Xcc-8004.5124.1 +0.6 2.0 hypothetical protein compare
Xcc-8004.1209.1 +0.6 2.6 D-galactarate permease compare
Xcc-8004.1491.1 +0.6 3.6 Glycosyltransferase compare
Xcc-8004.5006.1 +0.6 3.1 FIG01210483: hypothetical protein compare
Xcc-8004.3013.1 +0.6 0.9 hypothetical protein compare
Xcc-8004.1619.1 +0.6 1.4 PspA/IM30 family protein compare
Xcc-8004.3027.1 +0.6 2.0 hypothetical protein compare
Xcc-8004.4473.1 +0.6 4.0 FIG01212400: hypothetical protein compare
Xcc-8004.727.1 +0.6 2.3 FIG01210864: hypothetical protein compare
Xcc-8004.2089.1 +0.6 2.0 Xanthan biosynthesis glucuronosyltransferase GumK compare
Xcc-8004.5224.1 +0.6 0.8 bleomycin resistance protein compare
Xcc-8004.3321.1 +0.6 0.9 FIG01209847: hypothetical protein compare
Xcc-8004.3365.1 +0.6 1.4 FIG01209831: hypothetical protein compare
Xcc-8004.1637.1 +0.6 2.3 FIG01210422: hypothetical protein compare
Xcc-8004.1841.1 +0.6 0.8 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) compare
Xcc-8004.4070.1 +0.6 3.1 peptidyl-Asp metalloendopeptidase compare
Xcc-8004.4004.1 +0.6 1.7 FIG01211850: hypothetical protein compare
Xcc-8004.71.1 +0.6 1.0 hypothetical protein compare
Xcc-8004.4505.1 +0.6 1.9 membrane protein WxcE compare
Xcc-8004.3655.1 +0.6 0.6 FIG01210025: hypothetical protein compare
Xcc-8004.4188.1 +0.6 1.1 Trp repressor binding protein compare
Xcc-8004.5100.1 +0.6 0.5 FIG01211066: hypothetical protein compare
Xcc-8004.3057.1 +0.6 2.8 GTP cyclohydrolase I (EC 3.5.4.16) type 2 compare
Xcc-8004.3060.1 +0.6 2.9 FIG01211080: hypothetical protein compare
Xcc-8004.4625.1 +0.6 1.6 FIG01210439: hypothetical protein compare
Xcc-8004.2117.1 +0.6 1.5 FIG01209809: hypothetical protein compare
Xcc-8004.3731.1 +0.6 1.0 Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) compare
Xcc-8004.4852.1 +0.6 1.4 hypothetical protein compare
Xcc-8004.3582.1 +0.6 0.7 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.277.1 +0.6 1.5 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Xcc-8004.3523.1 +0.6 1.5 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit compare
Xcc-8004.989.1 +0.6 1.9 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Xcc-8004.3609.1 +0.6 1.5 FIG005069: Hypothetical protein compare
Xcc-8004.4498.1 +0.6 1.2 Mobile element protein compare
Xcc-8004.1210.1 +0.6 1.3 D-Glucuronolactone:NAD+ oxidoreductase (EC 1.2.1.3) compare
Xcc-8004.4248.1 +0.6 1.1 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Xcc-8004.107.1 +0.5 1.6 AtsE compare
Xcc-8004.3158.1 +0.5 2.0 Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) compare
Xcc-8004.4619.1 +0.5 2.4 FIG01212331: hypothetical protein compare
Xcc-8004.2082.1 +0.5 3.0 Xanthan biosynthesis glycosyltransferase GumD compare
Xcc-8004.1564.1 +0.5 1.4 Protein of unknown function UPF0060 compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in in planta xylem experiments

For in planta xylem Plant=Cauliflower; Treatment=None; Sample=xylem; Collection=Direct; Time=4_days across organisms