Experiment set9S111 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Xylemvessel barcodes Location 2 6 dpi (25 plantes)

200 most important genes:

  gene name fitness t score description  
Xcc-8004.2387.1 -5.4 -3.7 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Xcc-8004.1615.1 -5.0 -2.9 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.622.1 -4.1 -6.9 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Xcc-8004.3536.1 -3.9 -7.0 FIG01210913: hypothetical protein compare
Xcc-8004.1205.1 -3.8 -4.2 hypothetical protein compare
Xcc-8004.4620.1 -3.8 -8.4 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.1727.1 -3.8 -4.4 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.4481.1 -3.7 -7.9 hypothetical protein compare
Xcc-8004.1053.1 -3.5 -9.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Xcc-8004.1955.1 -3.5 -7.9 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.3282.1 -3.4 -10.6 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Xcc-8004.4398.1 -3.4 -8.7 Serine hydroxymethyltransferase (EC 2.1.2.1) compare
Xcc-8004.1964.1 -3.3 -15.1 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Xcc-8004.1676.1 -3.3 -9.7 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
Xcc-8004.2319.1 -3.3 -4.5 Acetylornithine deacetylase (EC 3.5.1.16) compare
Xcc-8004.1336.1 -3.2 -9.5 two-component system sensor protein compare
Xcc-8004.649.1 -3.2 -1.8 hypothetical protein compare
Xcc-8004.2943.1 -3.1 -5.9 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) compare
Xcc-8004.3395.1 -3.1 -4.0 Transcriptional regulator, GntR family compare
Xcc-8004.271.1 -3.1 -4.6 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.2316.1 -3.0 -12.5 N-acetylornithine carbamoyltransferase (EC 2.1.3.9) compare
Xcc-8004.621.1 -3.0 -6.0 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Xcc-8004.2323.1 -2.9 -8.3 Argininosuccinate lyase (EC 4.3.2.1) compare
Xcc-8004.2954.1 -2.9 -14.7 Threonine synthase (EC 4.2.3.1) compare
Xcc-8004.1059.1 -2.9 -8.5 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Xcc-8004.2956.1 -2.8 -2.5 Homoserine kinase (EC 2.7.1.39) compare
Xcc-8004.2945.1 -2.8 -2.7 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Xcc-8004.1049.1 -2.8 -7.9 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Xcc-8004.4824.1 -2.8 -8.5 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.3855.1 -2.8 -8.0 FIG01209965: hypothetical protein compare
Xcc-8004.2922.1 -2.8 -1.9 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.5020.1 -2.8 -5.0 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Xcc-8004.2944.1 -2.7 -9.7 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) compare
Xcc-8004.2322.1 -2.7 -5.9 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
Xcc-8004.4439.1 -2.7 -10.2 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
Xcc-8004.2957.1 -2.7 -8.9 Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) compare
Xcc-8004.2946.1 -2.7 -6.0 Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Xcc-8004.2011.1 -2.7 -2.8 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.2947.1 -2.7 -8.1 Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
Xcc-8004.4596.1 -2.7 -8.5 hypothetical protein compare
Xcc-8004.608.1 -2.7 -7.1 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Xcc-8004.601.1 -2.6 -7.8 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.1058.1 -2.6 -3.7 acetolactate synthase, regulatory subunit (EC 2.2.1.6) (from data) compare
Xcc-8004.43.1 -2.6 -9.3 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Xcc-8004.1967.1 -2.6 -7.7 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Xcc-8004.3537.1 -2.6 -8.3 Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) compare
Xcc-8004.1437.1 -2.6 -7.3 Kup system potassium uptake protein compare
Xcc-8004.957.1 -2.6 -4.0 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
Xcc-8004.4200.1 -2.5 -2.6 probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly compare
Xcc-8004.451.1 -2.5 -3.5 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Xcc-8004.44.1 -2.5 -18.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Xcc-8004.3346.1 -2.4 -4.6 hypothetical protein compare
Xcc-8004.4026.1 -2.4 -5.5 FIG01209666: hypothetical protein compare
Xcc-8004.1010.1 -2.4 -6.1 Aspartate aminotransferase (EC 2.6.1.1) compare
Xcc-8004.657.1 -2.4 -6.8 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
Xcc-8004.4428.1 -2.4 -2.0 General secretion pathway protein I compare
Xcc-8004.1022.1 -2.4 -5.4 hypothetical protein compare
Xcc-8004.130.1 -2.4 -7.8 hypothetical protein compare
Xcc-8004.4073.1 -2.3 -10.8 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
Xcc-8004.846.1 -2.3 -2.9 Protein of unknown function DUF484 compare
Xcc-8004.2337.1 -2.3 -6.0 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.659.1 -2.3 -3.1 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.2949.1 -2.2 -3.5 ATP phosphoribosyltransferase (EC 2.4.2.17) compare
Xcc-8004.618.1 -2.2 -2.8 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Xcc-8004.1060.1 -2.2 -9.0 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Xcc-8004.2081.1 -2.2 -3.8 Xanthan biosynthesis chain length determinant protein GumC compare
Xcc-8004.1050.1 -2.2 -2.6 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Xcc-8004.2420.1 -2.2 -6.7 PHA synthase subunit compare
Xcc-8004.3049.1 -2.2 -8.6 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.5253.1 -2.2 -1.4 hypothetical protein compare
Xcc-8004.3792.1 -2.2 -1.8 Mobile element protein compare
Xcc-8004.2012.1 -2.2 -5.3 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.178.1 -2.2 -1.5 hypothetical protein compare
Xcc-8004.1023.1 -2.1 -5.9 Phosphate-specific outer membrane porin OprP ; Pyrophosphate-specific outer membrane porin OprO compare
Xcc-8004.577.1 -2.1 -5.3 Transcriptional regulator, MarR family compare
Xcc-8004.1763.1 -2.1 -4.2 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.2327.1 -2.1 -7.1 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Xcc-8004.2977.1 -2.1 -14.1 hypothetical protein compare
Xcc-8004.1871.1 -2.1 -3.0 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) compare
Xcc-8004.3433.1 -2.1 -6.2 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Xcc-8004.951.1 -2.0 -1.9 General secretion pathway protein M compare
Xcc-8004.4025.1 -2.0 -8.4 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare
Xcc-8004.1016.1 -2.0 -4.7 Sucrose phosphorylase (EC 2.4.1.7) compare
Xcc-8004.3283.1 -2.0 -7.5 Phosphoserine aminotransferase (EC 2.6.1.52) compare
Xcc-8004.5087.1 -2.0 -2.3 FIG027190: Putative transmembrane protein compare
Xcc-8004.4112.1 -2.0 -3.4 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.1057.1 -1.9 -7.8 Threonine dehydratase (EC 4.3.1.19) compare
Xcc-8004.2931.1 -1.9 -3.8 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Xcc-8004.1434.1 -1.9 -1.6 FIG000859: hypothetical protein YebC compare
Xcc-8004.1372.1 -1.9 -3.9 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.4738.1 -1.9 -7.3 Lipopolysaccharide core biosynthesis glycosyl transferase compare
Xcc-8004.4024.1 -1.9 -6.1 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-) compare
Xcc-8004.3576.1 -1.9 -8.4 Intracellular PHB depolymerase (EC 3.1.1.-) compare
Xcc-8004.5368.1 -1.8 -3.4 FIG01210868: hypothetical protein compare
Xcc-8004.2561.1 -1.8 -6.6 FIG01213638: hypothetical protein compare
Xcc-8004.3054.1 -1.8 -1.6 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.4530.1 -1.8 -5.3 Dethiobiotin synthetase (EC 6.3.3.3) compare
Xcc-8004.2320.1 -1.8 -4.4 Acetylglutamate kinase (EC 2.7.2.8) compare
Xcc-8004.2079.1 -1.8 -3.5 Outer membrane protein GumB, involved in the export of xanthan compare
Xcc-8004.679.1 -1.8 -3.2 23Sr RNA gene compare
Xcc-8004.2948.1 -1.7 -4.4 Histidinol dehydrogenase (EC 1.1.1.23) compare
Xcc-8004.1028.1 -1.7 -6.6 Sensor protein PhoQ (EC 2.7.13.3) compare
Xcc-8004.5365.1 -1.7 -5.9 Uncharacterized ABC transporter, permease component YrbE compare
Xcc-8004.3281.1 -1.7 -3.8 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Xcc-8004.2318.1 -1.7 -3.8 Argininosuccinate synthase (EC 6.3.4.5) compare
Xcc-8004.322.1 -1.7 -3.2 Predicted transcriptional regulator LiuX of leucine degradation pathway, AcrR family compare
Xcc-8004.2421.1 -1.7 -10.6 Polyhydroxyalkanoic acid synthase compare
Xcc-8004.948.1 -1.7 -1.7 General secretion pathway protein J compare
Xcc-8004.4046.1 -1.7 -8.2 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.1236.1 -1.6 -4.4 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.4948.1 -1.6 -2.4 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Xcc-8004.5363.1 -1.6 -2.9 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Xcc-8004.2505.1 -1.6 -7.4 FIG01212099: hypothetical protein compare
Xcc-8004.249.1 -1.6 -7.0 Ammonium transporter compare
Xcc-8004.4423.1 -1.6 -1.6 General secretion pathway protein N compare
Xcc-8004.1374.1 -1.6 -1.7 Lipoprotein, putative compare
Xcc-8004.1710.1 -1.6 -4.9 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
Xcc-8004.403.1 -1.6 -2.9 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) compare
Xcc-8004.1056.1 -1.6 -3.0 2-isopropylmalate synthase (EC 2.3.3.13) compare
Xcc-8004.3958.1 -1.5 -3.3 Low molecular weight heat shock protein compare
Xcc-8004.3816.1 -1.5 -5.9 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Xcc-8004.4935.1 -1.5 -3.0 FIG01213190: hypothetical protein compare
Xcc-8004.2921.1 -1.5 -2.8 ferrous iron transport protein compare
Xcc-8004.456.1 -1.5 -1.2 carbonic anhydrase, family 3 compare
Xcc-8004.248.1 -1.5 -4.0 Nitrogen regulatory protein P-II compare
Xcc-8004.1118.1 -1.5 -1.2 hypothetical protein compare
Xcc-8004.2059.1 -1.5 -2.3 hypothetical protein compare
Xcc-8004.3130.1 -1.5 -3.8 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Xcc-8004.3492.1 -1.5 -1.1 FIG01211425: hypothetical protein compare
Xcc-8004.5199.1 -1.5 -3.5 hypothetical protein compare
Xcc-8004.826.1 -1.5 -8.9 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Xcc-8004.5352.1 -1.5 -2.4 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Xcc-8004.4327.1 -1.5 -1.0 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1962.1 -1.5 -1.9 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Xcc-8004.4426.1 -1.5 -6.4 General secretion pathway protein K compare
Xcc-8004.401.1 -1.4 -1.8 FMN reductase (EC 1.5.1.29) compare
Xcc-8004.914.1 -1.4 -5.0 tail-specific protease compare
Xcc-8004.4430.1 -1.4 -1.0 General secretion pathway protein G compare
Xcc-8004.1873.1 -1.4 -1.7 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) compare
Xcc-8004.1007.1 -1.4 -1.3 acetylxylan esterase compare
Xcc-8004.3324.1 -1.4 -4.1 Carbonic anhydrase (EC 4.2.1.1) compare
Xcc-8004.2754.1 -1.4 -7.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Xcc-8004.2343.1 -1.4 -2.3 Cytochrome c-type biogenesis protein CcmE, heme chaperone compare
Xcc-8004.505.1 -1.4 -7.2 Biotin synthase (EC 2.8.1.6) compare
Xcc-8004.3479.1 -1.4 -1.5 aklaviketone reductase compare
Xcc-8004.3817.1 -1.4 -4.4 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Xcc-8004.1616.1 -1.4 -1.1 Shikimate kinase I (EC 2.7.1.71) compare
Xcc-8004.3661.1 -1.4 -5.3 5'-methylthioadenosine phosphorylase (EC 2.4.2.28) compare
Xcc-8004.2950.1 -1.4 -3.6 His repressor compare
Xcc-8004.4776.1 -1.4 -2.3 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Xcc-8004.2929.1 -1.4 -4.6 D-2-hydroxyglutarate dehydrogenase compare
Xcc-8004.1026.1 -1.4 -3.4 Tricarboxylate transport transcriptional regulator TctD compare
Xcc-8004.2384.1 -1.4 -6.5 Heat shock (predicted periplasmic) protein YciM, precursor compare
Xcc-8004.4814.1 -1.4 -3.3 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Xcc-8004.270.1 -1.4 -3.9 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Xcc-8004.4836.1 -1.4 -3.3 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
Xcc-8004.3698.1 -1.4 -0.9 hypothetical protein compare
Xcc-8004.3120.1 -1.3 -2.8 RNA-binding protein Hfq compare
Xcc-8004.4737.1 -1.3 -3.8 Putative glycerophosphate (or ribitol phosphate) transferase relatede to lipopolysaccharide core biosynthesis compare
Xcc-8004.689.1 -1.3 -1.2 ATP-dependent DNA helicase recG (EC 3.6.1.-) compare
Xcc-8004.4425.1 -1.3 -5.0 General secretion pathway protein L compare
Xcc-8004.3978.1 -1.3 -2.5 FIG01211989: hypothetical protein compare
Xcc-8004.1511.1 -1.3 -1.8 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.4231.1 -1.3 -1.1 two-component system regulatory protein compare
Xcc-8004.2260.1 -1.3 -4.4 Acetoacetyl-CoA reductase (EC 1.1.1.36) compare
Xcc-8004.2326.1 -1.3 -1.9 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Xcc-8004.5349.1 -1.3 -2.4 FIG01210492: hypothetical protein compare
Xcc-8004.703.1 -1.3 -1.2 hypothetical protein compare
Xcc-8004.2385.1 -1.3 -7.1 lipopolysaccharide core biosynthesis protein compare
Xcc-8004.3862.1 -1.3 -3.4 Septum site-determining protein MinC compare
Xcc-8004.127.1 -1.3 -1.6 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.1138.1 -1.3 -3.9 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Xcc-8004.1064.1 -1.3 -2.1 hypothetical protein compare
Xcc-8004.1413.1 -1.3 -6.7 Outer membrane receptor proteins, mostly Fe transport compare
Xcc-8004.3310.1 -1.3 -4.0 Chromosome partition protein smc compare
Xcc-8004.4752.1 -1.3 -2.0 DNA topoisomerase I (EC 5.99.1.2) compare
Xcc-8004.1705.1 -1.3 -1.9 FIG01209877: hypothetical protein compare
Xcc-8004.1359.1 -1.2 -3.7 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.3676.1 -1.2 -2.3 Translation elongation factor LepA compare
Xcc-8004.5367.1 -1.2 -5.1 Uncharacterized ABC transporter, auxiliary component YrbC compare
Xcc-8004.726.1 -1.2 -0.9 Putative preQ0 transporter compare
Xcc-8004.4557.1 -1.2 -2.9 ABC transporter ATP-binding protein compare
Xcc-8004.4538.1 -1.2 -1.3 hypothetical protein compare
Xcc-8004.2937.1 -1.2 -5.7 Methylthioribulose-1-phosphate dehydratase (EC 4.2.1.109) compare
Xcc-8004.4264.1 -1.2 -1.5 ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17) compare
Xcc-8004.1559.1 -1.2 -5.0 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Xcc-8004.1134.1 -1.2 -4.1 Protein sirB1 compare
Xcc-8004.5222.1 -1.2 -2.6 hypothetical protein compare
Xcc-8004.2920.1 -1.1 -5.3 Ferrous iron transport protein B compare
Xcc-8004.2577.1 -1.1 -2.2 FIG034647: hypothetical protein in PFGI-1-like cluster compare
Xcc-8004.4427.1 -1.1 -1.8 General secretion pathway protein J compare
Xcc-8004.2839.1 -1.1 -1.3 Signal transduction histidine kinase CheA (EC 2.7.3.-) compare
Xcc-8004.3079.1 -1.1 -6.1 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) compare
Xcc-8004.3167.1 -1.1 -3.1 biotin synthesis protein compare
Xcc-8004.1334.1 -1.1 -1.2 hypothetical protein compare
Xcc-8004.790.1 -1.1 -3.6 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.337.1 -1.1 -1.9 ATPase, AFG1 family compare
Xcc-8004.4976.1 -1.1 -6.1 hypothetical protein compare
Xcc-8004.1515.1 -1.1 -2.4 hypothetical protein compare
Xcc-8004.1241.1 -1.1 -2.6 Phosphoglycerate kinase (EC 2.7.2.3) compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in in planta xylem experiments

For in planta xylem Plant=Cauliflower; Treatment=None; Sample=xylem; Collection=Direct; Time=6_days across organisms