| | gene | name | fitness | t score | description | |
|---|
| b1334 | fnr | -4.2 | -2.9 | DNA-binding transcriptional dual regulator, global regulator of anaerobic growth (NCBI) | compare |
| b4238 | nrdD | -3.4 | -18.6 | anaerobic ribonucleoside triphosphate reductase (NCBI) | compare |
| b4237 | nrdG | -3.3 | -12.2 | anaerobic ribonucleotide reductase activating protein (NCBI) | compare |
| b3465 | yhhF | -2.7 | -7.6 | predicted methyltransferase (NCBI) | compare |
| b0053 | surA | -2.6 | -4.5 | peptidyl-prolyl cis-trans isomerase (PPIase) (NCBI) | compare |
| b0462 | acrB | -2.3 | -15.2 | multidrug efflux system protein (NCBI) | compare |
| b0737 | tolQ | -2.2 | -2.9 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b0677 | nagA | -2.2 | -6.3 | N-acetylglucosamine-6-phosphate deacetylase (NCBI) | compare |
| b3021 | ygiT | -2.1 | -2.8 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0014 | dnaK | -2.1 | -2.3 | molecular chaperone DnaK (NCBI) | compare |
| b4402 | yjjY | -2.1 | -1.4 | hypothetical protein (NCBI) | compare |
| b0902 | pflA | -2.0 | -7.9 | pyruvate formate lyase activating enzyme 1 (NCBI) | compare |
| b0437 | clpP | -2.0 | -6.0 | ATP-dependent Clp protease proteolytic subunit (NCBI) | compare |
| b1818 | manY | -2.0 | -3.1 | mannose-specific enzyme IIC component of PTS (NCBI) | compare |
| b4025 | pgi | -2.0 | -8.2 | glucose-6-phosphate isomerase (NCBI) | compare |
| b0463 | acrA | -1.9 | -10.2 | multidrug efflux system (NCBI) | compare |
| b3229 | sspA | -1.8 | -2.4 | stringent starvation protein A (NCBI) | compare |
| b4515 | ybgT | -1.8 | -2.5 | hypothetical protein (NCBI) | compare |
| b3035 | tolC | -1.8 | -7.5 | outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes (VIMSS) | compare |
| b0738 | tolR | -1.8 | -1.2 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b1286 | rnb | -1.7 | -1.9 | exoribonuclease II (NCBI) | compare |
| b1882 | cheY | -1.7 | -0.9 | chemotaxis regulator transmitting signal to flagellar motor component (NCBI) | compare |
| b0739 | tolA | -1.6 | -2.3 | cell envelope integrity inner membrane protein TolA (NCBI) | compare |
| b0730 | mngR | -1.6 | -1.0 | DNA-binding transcriptional dual regulator, fatty-acyl-binding (NCBI) | compare |
| b0438 | clpX | -1.5 | -5.8 | ATP-dependent protease ATP-binding subunit (NCBI) | compare |
| b3163 | nlpI | -1.5 | -4.4 | hypothetical protein (NCBI) | compare |
| b1438 | ydcQ | -1.4 | -3.8 | predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b2620 | smpB | -1.4 | -1.3 | SsrA-binding protein (NCBI) | compare |
| b1171 | b1171 | -1.4 | -1.9 | orf, hypothetical protein (VIMSS) | compare |
| b0239 | frsA | -1.4 | -7.5 | fermentation/respiration switch protein (NCBI) | compare |
| b0741 | pal | -1.4 | -3.2 | peptidoglycan-associated outer membrane lipoprotein (NCBI) | compare |
| b0145 | dksA | -1.4 | -2.6 | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | compare |
| b0763 | modA | -1.4 | -4.9 | molybdate transporter subunit (NCBI) | compare |
| b3857 | mobA | -1.4 | -5.6 | molybdopterin-guanine dinucleotide biosynthesis protein A (NCBI) | compare |
| b0740 | tolB | -1.4 | -3.4 | translocation protein TolB precursor (NCBI) | compare |
| b1109 | ndh | -1.4 | -3.5 | respiratory NADH dehydrogenase 2/cupric reductase (NCBI) | compare |
| b3930 | menA | -1.3 | -10.2 | 1,4-dihydroxy-2-naphthoate octaprenyltransferase (NCBI) | compare |
| b3839 | tatC | -1.3 | -5.5 | TatABCE protein translocation system subunit (NCBI) | compare |
| b4535 | yniD | -1.3 | -1.7 | predicted protein (RefSeq) | compare |
| b0783 | moaC | -1.3 | -5.0 | molybdenum cofactor biosynthesis protein C (NCBI) | compare |
| b2376 | ypdI | -1.3 | -2.3 | predicted lipoprotein involved in colanic acid biosynthesis (NCBI) | compare |
| b2727 | hypB | -1.2 | -4.2 | GTP hydrolase involved in nickel liganding into hydrogenases (NCBI) | compare |
| b1361 | ydaW | -1.2 | -0.6 | orf, hypothetical protein (VIMSS) | compare |
| b0683 | fur | -1.2 | -1.3 | ferric uptake regulator (NCBI) | compare |
| b3082 | ygjM | -1.2 | -1.5 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1677 | lpp | -1.2 | -2.2 | murein lipoprotein (NCBI) | compare |
| b1506 | yneL | -1.2 | -1.0 | predicted transcriptional regulator (NCBI) | compare |
| b1961 | dcm | -1.2 | -1.2 | DNA cytosine methylase (NCBI) | compare |
| b1758 | b1758 | -1.2 | -1.5 | putative cytochrome oxidase (VIMSS) | compare |
| b4603 | rseX | -1.2 | -0.6 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b0765 | modC | -1.1 | -4.6 | molybdate transporter subunit (NCBI) | compare |
| b2814 | metZ | -1.1 | -1.5 | tRNA-Met (NCBI) | compare |
| b4701 | sokX | -1.1 | -0.7 | sok-related sRNA, function unknown (RefSeq) | compare |
| b4589 | ylcI | -1.1 | -2.1 | hypothetical protein (RefSeq) | compare |
| b1192 | ldcA | -1.1 | -4.0 | L,D-carboxypeptidase A (NCBI) | compare |
| b1434 | ydcN | -1.1 | -2.1 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1686 | ydiI | -1.1 | -2.0 | hypothetical protein (NCBI) | compare |
| b0296 | ykgM | -1.1 | -3.1 | 50S ribosomal protein L31 (NCBI) | compare |
| b4201 | priB | -1.1 | -2.2 | primosomal replication protein N (NCBI) | compare |
| b0990 | cspG | -1.1 | -0.7 | DNA-binding transcriptional regulator (NCBI) | compare |
| b0903 | pflB | -1.1 | -7.0 | pyruvate formate lyase I (NCBI) | compare |
| b2937 | speB | -1.1 | -4.5 | agmatinase (NCBI) | compare |
| b4042 | dgkA | -1.0 | -1.7 | diacylglycerol kinase (NCBI) | compare |
| b4414 | tff | -1.0 | -2.2 | unknown RNA (NCBI) | compare |
| b2456 | cchB | -1.0 | -2.3 | predicted carboxysome structural protein, ethanolamine utilization protein (NCBI) | compare |
| b4570 | lomR | -1.0 | -1.7 | no description | compare |
| b2363 | yfdT | -1.0 | -1.5 | CPS-53 (KpLE1) prophage; predicted protein (NCBI) | compare |
| b2188 | yejM | -1.0 | -6.0 | predicted hydrolase, inner membrane (NCBI) | compare |
| b1533 | ydeD | -1.0 | -2.2 | orf, hypothetical protein (VIMSS) | compare |
| b2215 | ompC | -1.0 | -5.6 | outer membrane porin protein C (NCBI) | compare |
| b2953 | yggU | -1.0 | -0.9 | orf, hypothetical protein (VIMSS) | compare |
| b1413 | hrpA | -1.0 | -5.9 | ATP-dependent helicase (RefSeq) | conserved |
| b1259 | yciG | -1.0 | -1.4 | orf, hypothetical protein (VIMSS) | compare |
| b0009 | mog | -1.0 | -4.4 | molybdenum cofactor biosynthesis protein (NCBI) | compare |
| b1765 | ydjA | -1.0 | -1.1 | predicted oxidoreductase (NCBI) | compare |
| b0957 | ompA | -1.0 | -2.7 | outer membrane protein A (3a;II*;G;d) (NCBI) | compare |
| b2510 | b2510 | -1.0 | -3.5 | orf, hypothetical protein (VIMSS) | compare |
| b3838 | tatB | -1.0 | -4.7 | sec-independent translocase (NCBI) | compare |
| b1600 | mdtJ | -1.0 | -0.9 | multidrug efflux system transporter (NCBI) | compare |
| b3636 | rpmG | -1.0 | -0.8 | 50S ribosomal protein L33 (NCBI) | compare |
| b1792 | yeaO | -1.0 | -2.6 | orf, hypothetical protein (VIMSS) | compare |
| b1607 | ydgC | -1.0 | -1.3 | conserved inner membrane protein associated with alginate biosynthesis (NCBI) | compare |
| b1346 | ydaQ | -1.0 | -1.3 | orf, hypothetical protein (VIMSS) | compare |
| b2528 | iscA | -0.9 | -1.3 | iron-sulfur cluster assembly protein (NCBI) | compare |
| b4435 | isrC | -0.9 | -1.9 | unknown RNA (NCBI) | compare |
| b1566 | flxA | -0.9 | -2.1 | Qin prophage; predicted protein (NCBI) | compare |
| b2329 | aroC | -0.9 | -3.3 | chorismate synthase (NCBI) | compare |
| b2518 | ndk | -0.9 | -1.7 | nucleoside diphosphate kinase (NCBI) | compare |
| b4695 | ykgT | -0.9 | -1.7 | no description | compare |
| b2288 | nuoA | -0.9 | -2.4 | NADH dehydrogenase I chain A (VIMSS) | compare |
| b3493 | pitA | -0.9 | -3.8 | phosphate transporter, low-affinity (NCBI) | compare |
| b0866 | ybjQ | -0.9 | -1.2 | hypothetical protein (NCBI) | compare |
| b1836 | yebV | -0.9 | -1.6 | orf, hypothetical protein (VIMSS) | compare |
| b3478 | nikC | -0.9 | -5.5 | nickel transporter subunit (NCBI) | compare |
| b4458 | oxyS | -0.9 | -1.0 | global regulatory RNA (NCBI) | compare |
| b0781 | moaA | -0.9 | -5.2 | molybdenum cofactor biosynthesis protein A (NCBI) | compare |
| b1348 | lar | -0.9 | -1.1 | Rac prophage; restriction alleviation protein (NCBI) | compare |
| b0623 | cspE | -0.9 | -1.6 | cold shock protein E (NCBI) | compare |
| b0819 | ybiS | -0.9 | -5.0 | hypothetical protein (NCBI) | compare |
| b4545 | ypdJ | -0.9 | -1.5 | no description | compare |
| b2282 | nuoH | -0.9 | -2.3 | NADH dehydrogenase subunit H (NCBI) | compare |
| b0827 | moeA | -0.9 | -3.0 | molybdopterin biosynthesis protein (NCBI) | compare |
| b0764 | modB | -0.9 | -3.2 | molybdate ABC transporter permease protein (NCBI) | compare |
| b2569 | lepA | -0.9 | -2.5 | GTP-binding protein LepA (NCBI) | compare |
| b1161 | ycgX | -0.9 | -0.7 | hypothetical protein (NCBI) | compare |
| b2997 | hybO | -0.9 | -4.4 | hydrogenase 2, small subunit (NCBI) | compare |
| b0548 | ninE | -0.9 | -2.8 | DLP12 prophage; conserved protein (NCBI) | compare |
| b2939 | yqgB | -0.9 | -1.2 | predicted protein (RefSeq) | compare |
| b0232 | yafN | -0.8 | -0.5 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b3237 | argR | -0.8 | -2.4 | arginine repressor (NCBI) | compare |
| b0785 | moaE | -0.8 | -2.5 | molybdopterin synthase, large subunit (NCBI) | compare |
| b4550 | yhdL | -0.8 | -3.8 | hypothetical protein (NCBI) | compare |
| b0406 | tgt | -0.8 | -3.9 | queuine tRNA-ribosyltransferase (NCBI) | compare |
| b3784 | rfe | -0.8 | -6.2 | UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase (NCBI) | compare |
| b3764 | yifE | -0.8 | -2.5 | hypothetical protein (NCBI) | compare |
| b1025 | ycdT | -0.8 | -0.7 | predicted diguanylate cyclase (NCBI) | compare |
| b1874 | cutC | -0.8 | -1.6 | copper homeostasis protein (NCBI) | compare |
| b3836 | b3836 | -0.8 | -2.3 | orf, hypothetical protein (VIMSS) | compare |
| b1855 | lpxM | -0.8 | -2.9 | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (NCBI) | compare |
| b0471 | ybaB | -0.8 | -2.4 | hypothetical protein (NCBI) | compare |
| b0049 | apaH | -0.8 | -1.8 | diadenosinetetraphosphatase (NCBI) | compare |
| b4179 | vacB | -0.8 | -3.0 | putative enzyme (VIMSS) | compare |
| b4529 | ydbJ | -0.8 | -1.0 | hypothetical protein (NCBI) | compare |
| b1827 | kdgR | -0.8 | -2.0 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0908 | aroA | -0.8 | -4.2 | 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) | compare |
| b1590 | ynfH | -0.8 | -2.7 | oxidoreductase, membrane subunit (NCBI) | compare |
| b3476 | nikA | -0.8 | -4.5 | nickel transporter subunit (NCBI) | compare |
| b0826 | moeB | -0.8 | -3.4 | molybdopterin biosynthesis protein MoeB (NCBI) | compare |
| b2143 | cdd | -0.8 | -2.6 | cytidine deaminase (NCBI) | compare |
| b3649 | rpoZ | -0.8 | -1.8 | DNA-directed RNA polymerase subunit omega (NCBI) | compare |
| b1168 | b1168 | -0.8 | -1.2 | putative proteases (VIMSS) | compare |
| b3870 | glnA | -0.8 | -1.5 | glutamine synthetase (NCBI) | compare |
| b4509 | ylcG | -0.8 | -1.7 | DLP12 prophage; predicted protein (NCBI) | compare |
| b4579 | yaiX | -0.8 | -2.8 | no description | compare |
| b2479 | gcvR | -0.7 | -2.8 | transcriptional regulation of gcv operon (VIMSS) | compare |
| b1620 | malI | -0.7 | -1.5 | DNA-binding transcriptional repressor (NCBI) | compare |
| b0736 | ybgC | -0.7 | -2.1 | predicted acyl-CoA thioesterase (NCBI) | compare |
| b1951 | rcsA | -0.7 | -0.5 | DNA-binding transcriptional activator, co-regulator with RcsB (NCBI) | compare |
| b1921 | fliZ | -0.7 | -1.9 | orf, hypothetical protein (VIMSS) | compare |
| b3094 | exuR | -0.7 | -3.1 | negative regulator of exu regulon, exuT, uxaAC, and uxuB (VIMSS) | compare |
| b2553 | glnB | -0.7 | -2.4 | regulatory protein P-II for glutamine synthetase (NCBI) | compare |
| b1830 | prc | -0.7 | -2.5 | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | compare |
| b1431 | ydcL | -0.7 | -2.1 | predicted lipoprotein (NCBI) | compare |
| b3479 | nikD | -0.7 | -3.9 | nickel transporter subunit (NCBI) | compare |
| b0550 | rusA | -0.7 | -1.1 | DLP12 prophage; endonuclease RUS (NCBI) | compare |
| b0802 | ybiJ | -0.7 | -1.7 | hypothetical protein (NCBI) | compare |
| b3446 | yrhB | -0.7 | -2.5 | hypothetical protein (NCBI) | compare |
| b3226 | yhcK | -0.7 | -2.6 | putative FADA-type transcriptional regulator (VIMSS) | compare |
| b0688 | pgm | -0.7 | -1.8 | phosphoglucomutase (NCBI) | compare |
| b1485 | ddpC | -0.7 | -2.1 | D-ala-D-ala transporter subunit (NCBI) | compare |
| b0965 | b0965 | -0.7 | -1.4 | orf, hypothetical protein (VIMSS) | compare |
| b1861 | ruvA | -0.7 | -0.4 | Holliday junction DNA helicase motor protein (NCBI) | compare |
| b4240 | treB | -0.7 | -4.8 | fused trehalose(maltose)-specific PTS enzyme: IIB component/IIC component (NCBI) | compare |
| b2698 | recX | -0.7 | -1.7 | RecA regulator RecX (NCBI) | compare |
| b1591 | b1591 | -0.7 | -1.3 | putative oxidoreductase component (VIMSS) | compare |
| b0746 | valZ | -0.7 | -1.5 | tRNA-Val (NCBI) | compare |
| b2423 | cysW | -0.7 | -2.9 | sulfate/thiosulfate transporter subunit (NCBI) | compare |
| b3164 | pnp | -0.7 | -1.4 | polynucleotide phosphorylase/polyadenylase (RefSeq) | compare |
| b1295 | ymjA | -0.7 | -1.6 | hypothetical protein (NCBI) | compare |
| b4494 | arpB | -0.7 | -0.4 | no description | compare |
| b2712 | hypF | -0.7 | -4.4 | carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases (NCBI) | compare |
| b2995 | hybB | -0.7 | -4.3 | predicted hydrogenase 2 cytochrome b type component (NCBI) | compare |
| b3644 | yicC | -0.7 | -3.2 | hypothetical protein (NCBI) | compare |
| b1536 | ydeI | -0.7 | -0.4 | hypothetical protein (NCBI) | compare |
| b1095 | fabF | -0.7 | -3.2 | 3-oxoacyl-(acyl carrier protein) synthase (NCBI) | compare |
| b2729 | hypD | -0.7 | -3.8 | protein required for maturation of hydrogenases (NCBI) | compare |
| b2174 | b2174 | -0.7 | -3.8 | orf, hypothetical protein (VIMSS) | compare |
| b0563 | tfaX | -0.7 | -2.7 | DLP12 prophage; predicted protein (RefSeq) | compare |
| b1503 | ydeR | -0.7 | -1.5 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b1124 | potC | -0.7 | -2.4 | spermidine/putrescine ABC transporter membrane protein (NCBI) | compare |
| b0506 | allR | -0.7 | -2.9 | DNA-binding transcriptional repressor (NCBI) | compare |
| b3349 | slyD | -0.7 | -3.3 | FKBP-type peptidyl prolyl cis-trans isomerase (rotamase) (NCBI) | compare |
| b1123 | potD | -0.6 | -2.6 | spermidine/putrescine ABC transporter periplasmic substrate-binding protein (NCBI) | compare |
| b1040 | csgD | -0.6 | -0.4 | DNA-binding transcriptional activator in two-component regulatory system (NCBI) | compare |
| b4480 | hdfR | -0.6 | -2.5 | transcriptional regulator HdfR (NCBI) | compare |
| b2962 | yggX | -0.6 | -1.6 | hypothetical protein (NCBI) | compare |
| b1579 | intQ | -0.6 | -1.1 | Qin prophage; predicted defective integrase (RefSeq) | compare |
| b1690 | ydiM | -0.6 | -0.4 | predicted transporter (NCBI) | compare |
| b1258 | yciF | -0.6 | -0.4 | hypothetical protein (NCBI) | compare |
| b4640 | yoeG | -0.6 | -0.9 | no description | compare |
| b0178 | hlpA | -0.6 | -1.8 | periplasmic chaperone (NCBI) | compare |
| b4431 | rprA | -0.6 | -1.1 | Positive regulatory sRNA for RpoS translation; non-essential gene (RefSeq) | compare |
| b2576 | srmB | -0.6 | -1.5 | ATP-dependent RNA helicase (NCBI) | compare |
| b1634 | tppB | -0.6 | -2.3 | putative tripeptide transporter permease (NCBI) | compare |
| b1382 | ynbE | -0.6 | -1.1 | predicted lipoprotein (NCBI) | compare |
| b0761 | modE | -0.6 | -3.0 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b3650 | spoT | -0.6 | -3.2 | bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (NCBI) | compare |
| b2017 | yefM | -0.6 | -0.9 | orf, hypothetical protein (VIMSS) | compare |
| b0890 | ftsK | -0.6 | -1.2 | DNA-binding membrane protein required for chromosome resolution and partitioning (NCBI) | compare |
| b1344 | ydaO | -0.6 | -1.3 | predicted C32 tRNA thiolase (NCBI) | compare |
| b0088 | murD | -0.6 | -1.1 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase (NCBI) | compare |
| b2868 | xdhC | -0.6 | -3.9 | xanthine dehydrogenase, Fe-S binding subunit (NCBI) | compare |
| b0535 | fimZ | -0.6 | -1.3 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2274 | yfbO | -0.6 | -1.9 | predicted protein (RefSeq) | compare |
| b2081 | yegQ | -0.6 | -3.4 | predicted peptidase (NCBI) | compare |
| b2313 | cvpA | -0.6 | -2.2 | membrane protein required for colicin V production (NCBI) | compare |
| b1831 | proQ | -0.6 | -1.8 | putative solute/DNA competence effector (NCBI) | compare |
| b1222 | narX | -0.6 | -2.2 | sensory histidine kinase in two-component regulatory system with NarL (NCBI) | compare |
| b1875 | yecM | -0.6 | -2.3 | orf, hypothetical protein (VIMSS) | compare |
| b3617 | kbl | -0.6 | -3.0 | 2-amino-3-ketobutyrate coenzyme A ligase (NCBI) | compare |