| | gene | name | fitness | t score | description | |
|---|
| b4150 | ampC | -5.4 | -6.4 | beta-lactamase/D-alanine carboxypeptidase (NCBI) | conserved |
| b1105 | ycfM | -5.3 | -3.7 | predicted outer membrane lipoprotein (NCBI) | compare |
| b0433 | ampG | -5.2 | -7.9 | muropeptide transporter (NCBI) | conserved |
| b4392 | slt | -5.0 | -10.6 | soluble lytic murein transglycosylase (VIMSS) | conserved |
| b0381 | ddlA | -5.0 | -4.8 | D-alanylalanine synthetase (NCBI) | compare |
| b1192 | ldcA | -4.6 | -3.2 | L,D-carboxypeptidase A (NCBI) | compare |
| b0728 | sucC | -4.6 | -5.5 | succinyl-CoA synthetase subunit beta (NCBI) | compare |
| b2553 | glnB | -4.5 | -3.1 | regulatory protein P-II for glutamine synthetase (NCBI) | compare |
| b0088 | murD | -4.3 | -2.6 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase (NCBI) | compare |
| b0434 | yajG | -4.2 | -8.0 | putative polymerase/proteinase (VIMSS) | conserved |
| b3742 | mioC | -4.2 | -5.6 | flavodoxin (NCBI) | compare |
| b4238 | nrdD | -4.1 | -17.6 | anaerobic ribonucleoside triphosphate reductase (NCBI) | compare |
| b4053 | alr | -4.1 | -6.9 | alanine racemase (NCBI) | compare |
| b0149 | mrcB | -4.1 | -2.8 | penicillin-binding protein 1b (NCBI) | compare |
| b3609 | secB | -4.0 | -2.7 | export protein SecB (NCBI) | compare |
| b0957 | ompA | -4.0 | -2.7 | outer membrane protein A (3a;II*;G;d) (NCBI) | compare |
| b1658 | purR | -3.9 | -3.8 | DNA-binding transcriptional repressor, hypoxanthine-binding (NCBI) | compare |
| b0436 | tig | -3.8 | -7.3 | trigger factor (NCBI) | compare |
| b0059 | hepA | -3.7 | -14.2 | ATP-dependent helicase HepA (NCBI) | compare |
| b4237 | nrdG | -3.7 | -8.9 | anaerobic ribonucleotide reductase activating protein (NCBI) | compare |
| b3150 | yraP | -3.6 | -6.4 | hypothetical protein (NCBI) | compare |
| b0110 | ampD | -3.6 | -6.5 | N-acetyl-anhydromuranmyl-L-alanine amidase (NCBI) | conserved |
| b3764 | yifE | -3.4 | -5.2 | hypothetical protein (NCBI) | compare |
| b3341 | rpsG | -3.4 | -2.0 | 30S ribosomal protein S7 (NCBI) | compare |
| b1150 | ymfR | -3.4 | -1.2 | e14 prophage; predicted protein (NCBI) | compare |
| b2701 | mltB | -3.3 | -7.3 | membrane-bound lytic murein transglycosylase B (NCBI) | compare |
| b0237 | pepD | -3.3 | -6.7 | aminoacyl-histidine dipeptidase (peptidase D) (NCBI) | compare |
| b1101 | ptsG | -3.3 | -10.1 | fused glucose-specific PTS enzymes: IIB component/IIC component (NCBI) | compare |
| b0605 | ahpC | -3.3 | -4.4 | alkyl hydroperoxide reductase, C22 subunit (NCBI) | compare |
| b1429 | tehA | -3.2 | -2.0 | potassium-tellurite ethidium and proflavin transporter (NCBI) | compare |
| b1582 | ynfA | -3.2 | -3.1 | hypothetical protein (NCBI) | compare |
| b3195 | yrbF | -3.2 | -10.4 | predicted toluene transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b0902 | pflA | -3.1 | -7.5 | pyruvate formate lyase activating enzyme 1 (NCBI) | compare |
| b4201 | priB | -3.0 | -2.9 | primosomal replication protein N (NCBI) | compare |
| b3032 | cpdA | -3.0 | -7.9 | cyclic 3',5'-adenosine monophosphate phosphodiesterase (NCBI) | compare |
| b0912 | ihfB | -2.9 | -3.2 | integration host factor subunit beta (NCBI) | compare |
| b2813 | mltA | -2.9 | -9.6 | membrane-bound lytic murein transglycosylase A (NCBI) | compare |
| b0741 | pal | -2.9 | -2.0 | peptidoglycan-associated outer membrane lipoprotein (NCBI) | compare |
| b1104 | ycfL | -2.9 | -2.3 | hypothetical protein (NCBI) | compare |
| b3617 | kbl | -2.9 | -6.4 | 2-amino-3-ketobutyrate coenzyme A ligase (NCBI) | compare |
| b3163 | nlpI | -2.9 | -4.4 | hypothetical protein (NCBI) | compare |
| b3164 | pnp | -2.9 | -2.0 | polynucleotide phosphorylase/polyadenylase (RefSeq) | compare |
| b0632 | dacA | -2.9 | -7.7 | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) (NCBI) | compare |
| b3194 | yrbE | -2.8 | -11.4 | predicted toluene transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b3868 | glnG | -2.8 | -3.8 | fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein (NCBI) | compare |
| b3616 | tdh | -2.8 | -4.2 | L-threonine 3-dehydrogenase (NCBI) | compare |
| b1827 | kdgR | -2.8 | -3.3 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1850 | eda | -2.7 | -2.6 | keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (NCBI) | compare |
| b3226 | yhcK | -2.7 | -4.7 | putative FADA-type transcriptional regulator (VIMSS) | compare |
| b2896 | ygfX | -2.7 | -6.1 | hypothetical protein (NCBI) | conserved |
| b1103 | ycfF | -2.7 | -1.3 | orf, hypothetical protein (VIMSS) | compare |
| b2174 | b2174 | -2.6 | -8.2 | orf, hypothetical protein (VIMSS) | compare |
| b4025 | pgi | -2.6 | -7.9 | glucose-6-phosphate isomerase (NCBI) | compare |
| b1758 | b1758 | -2.6 | -1.3 | putative cytochrome oxidase (VIMSS) | compare |
| b3193 | yrbD | -2.6 | -9.3 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b4220 | ytfM | -2.6 | -11.8 | predicted outer membrane protein and surface antigen (NCBI) | compare |
| b1684 | sufA | -2.6 | -3.0 | iron-sulfur cluster assembly scaffold protein (NCBI) | compare |
| b3649 | rpoZ | -2.6 | -3.0 | DNA-directed RNA polymerase subunit omega (NCBI) | compare |
| b0737 | tolQ | -2.5 | -1.7 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b0633 | rlpA | -2.5 | -9.0 | minor lipoprotein (NCBI) | compare |
| b4480 | hdfR | -2.5 | -5.6 | transcriptional regulator HdfR (NCBI) | compare |
| b2317 | dedA | -2.5 | -4.5 | conserved inner membrane protein (NCBI) | compare |
| b3792 | wzxE | -2.5 | -3.0 | O-antigen translocase (NCBI) | compare |
| b2576 | srmB | -2.5 | -1.7 | ATP-dependent RNA helicase (NCBI) | compare |
| b3388 | damX | -2.5 | -14.2 | hypothetical protein (NCBI) | compare |
| b3205 | yhbJ | -2.5 | -3.3 | hypothetical protein (NCBI) | compare |
| b1651 | gloA | -2.5 | -3.0 | glyoxalase I, Ni-dependent (NCBI) | compare |
| b0740 | tolB | -2.5 | -1.7 | translocation protein TolB precursor (NCBI) | compare |
| b3191 | yrbB | -2.4 | -8.5 | orf, hypothetical protein (VIMSS) | compare |
| b2318 | truA | -2.4 | -2.7 | tRNA pseudouridine synthase A (NCBI) | compare |
| b3166 | truB | -2.3 | -6.3 | tRNA pseudouridine synthase B (NCBI) | compare |
| b2479 | gcvR | -2.3 | -4.8 | transcriptional regulation of gcv operon (VIMSS) | compare |
| b1304 | pspA | -2.3 | -3.7 | regulatory protein for phage-shock-protein operon (NCBI) | compare |
| b3836 | b3836 | -2.3 | -4.8 | orf, hypothetical protein (VIMSS) | compare |
| b4221 | ytfN | -2.3 | -11.5 | hypothetical protein (NCBI) | compare |
| b1949 | fliQ | -2.3 | -2.5 | flagellar biosynthesis protein Q (NCBI) | compare |
| b0729 | sucD | -2.3 | -2.8 | succinyl-CoA synthetase subunit alpha (NCBI) | compare |
| b2807 | ygdD | -2.3 | -4.9 | conserved inner membrane protein (NCBI) | compare |
| b3349 | slyD | -2.3 | -6.5 | FKBP-type peptidyl prolyl cis-trans isomerase (rotamase) (NCBI) | compare |
| b2346 | vacJ | -2.3 | -7.1 | predicted lipoprotein (NCBI) | compare |
| b3192 | yrbC | -2.3 | -8.9 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b0211 | mltD | -2.3 | -6.1 | predicted membrane-bound lytic murein transglycosylase D (NCBI) | conserved |
| b0081 | mraZ | -2.2 | -5.0 | hypothetical protein (NCBI) | compare |
| b1107 | nagZ | -2.2 | -4.1 | beta-hexosaminidase (NCBI) | compare |
| b2727 | hypB | -2.2 | -5.2 | GTP hydrolase involved in nickel liganding into hydrogenases (NCBI) | compare |
| b1493 | gadB | -2.2 | -0.7 | glutamate decarboxylase B, PLP-dependent (NCBI) | compare |
| b3131 | agaR | -2.2 | -3.8 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b3871 | bipA | -2.1 | -8.2 | GTP-binding protein (NCBI) | compare |
| b2350 | yfdG | -2.1 | -4.4 | CPS-53 (KpLE1) prophage; bactoprenol-linked glucose translocase (flippase) (NCBI) | compare |
| b3094 | exuR | -2.1 | -3.5 | negative regulator of exu regulon, exuT, uxaAC, and uxuB (VIMSS) | compare |
| b3610 | grxC | -2.1 | -5.5 | glutaredoxin 3 (NCBI) | compare |
| b2730 | hypE | -2.0 | -7.4 | carbamoyl phosphate phosphatase, hydrogenase 3 maturation protein (RefSeq) | compare |
| b0623 | cspE | -2.0 | -1.6 | cold shock protein E (NCBI) | compare |
| b1183 | umuD | -2.0 | -1.6 | DNA polymerase V, subunit D (NCBI) | compare |
| b4451 | ryhB | -2.0 | -1.7 | Regulatory sRNA mediating positive Fur regulon response; requires Hfq for function; global iron regulator; degraded by RNase E when bound to target (RefSeq) | compare |
| b4206 | ytfB | -2.0 | -7.1 | orf, hypothetical protein (VIMSS) | compare |
| b3839 | tatC | -2.0 | -5.1 | TatABCE protein translocation system subunit (NCBI) | compare |
| b3655 | yicH | -2.0 | -10.3 | hypothetical protein (NCBI) | compare |
| b4294 | insA-7 | -2.0 | -2.1 | KpLE2 phage-like element; IS1 repressor protein InsA (NCBI) | compare |
| b0145 | dksA | -2.0 | -2.3 | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | compare |
| b3636 | rpmG | -2.0 | -1.3 | 50S ribosomal protein L33 (NCBI) | compare |
| b1924 | fliD | -2.0 | -5.8 | flagellar capping protein (NCBI) | conserved |
| b4233 | mpl | -2.0 | -7.7 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (NCBI) | conserved |
| b4568 | ytjA | -2.0 | -1.7 | predicted protein (RefSeq) | compare |
| b4324 | uxuR | -1.9 | -8.6 | DNA-binding transcriptional repressor (NCBI) | compare |
| b4585 | sroB | -1.9 | -1.0 | Novel sRNA, function unknown (RefSeq) | compare |
| b1889 | motB | -1.9 | -4.2 | flagellar motor protein MotB (NCBI) | compare |
| b2620 | smpB | -1.9 | -1.3 | SsrA-binding protein (NCBI) | compare |
| b1241 | adhE | -1.9 | -8.0 | fused acetaldehyde-CoA dehydrogenase/iron-dependent alcohol dehydrogenase/pyruvate-formate lyase deactivase (NCBI) | compare |
| b4402 | yjjY | -1.9 | -1.0 | hypothetical protein (NCBI) | compare |
| b0560 | nohB | -1.9 | -2.6 | DLP12 prophage; DNA packaging protein (NCBI) | compare |
| b2517 | yfgB | -1.9 | -7.7 | predicted enzyme (NCBI) | conserved |
| b2528 | iscA | -1.9 | -1.8 | iron-sulfur cluster assembly protein (NCBI) | compare |
| b4046 | yjbK | -1.9 | -6.0 | putative regulator (VIMSS) | compare |
| b1476 | fdnI | -1.9 | -0.6 | formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI) | compare |
| b0051 | ksgA | -1.9 | -2.2 | dimethyladenosine transferase (NCBI) | compare |
| b1634 | tppB | -1.9 | -4.5 | putative tripeptide transporter permease (NCBI) | compare |
| b0820 | ybiT | -1.9 | -7.2 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b0877 | ybjX | -1.8 | -5.0 | hypothetical protein (NCBI) | compare |
| b1575 | dicB | -1.8 | -1.2 | Qin prophage; cell division inhibition protein (NCBI) | compare |
| b3928 | yiiU | -1.8 | -5.1 | hypothetical protein (NCBI) | compare |
| b3096 | yqjB | -1.8 | -3.3 | hypothetical protein (NCBI) | compare |
| b2217 | rcsB | -1.8 | -3.8 | DNA-binding response regulator in two-component regulatory system with RcsC and YojN (NCBI) | compare |
| b3545 | proK | -1.8 | -1.3 | tRNA-Pro (NCBI) | compare |
| b3237 | argR | -1.8 | -3.8 | arginine repressor (NCBI) | compare |
| b1945 | fliM | -1.8 | -6.1 | flagellar motor switch protein M (NCBI) | compare |
| b2809 | b2809 | -1.8 | -2.7 | orf, hypothetical protein (VIMSS) | compare |
| b0092 | ddlB | -1.8 | -3.8 | D-alanylalanine synthetase (NCBI) | compare |
| b3611 | yibN | -1.8 | -4.6 | predicted rhodanese-related sulfurtransferase (NCBI) | compare |
| b1125 | potB | -1.8 | -4.3 | spermidine/putrescine ABC transporter membrane protein (NCBI) | compare |
| b3838 | tatB | -1.7 | -6.3 | sec-independent translocase (NCBI) | compare |
| b1531 | marA | -1.7 | -2.2 | multiple antibiotic resistance; transcriptional activator of defense systems (VIMSS) | compare |
| b3229 | sspA | -1.7 | -1.7 | stringent starvation protein A (NCBI) | compare |
| b3794 | rffM | -1.7 | -5.9 | putative UDP-N-acetyl-D-mannosaminuronic acid transferase (NCBI) | compare |
| b2997 | hybO | -1.7 | -6.0 | hydrogenase 2, small subunit (NCBI) | compare |
| b0739 | tolA | -1.7 | -1.2 | cell envelope integrity inner membrane protein TolA (NCBI) | compare |
| b1848 | yebG | -1.7 | -1.1 | conserved protein regulated by LexA (NCBI) | compare |
| b1613 | manA | -1.7 | -2.1 | mannose-6-phosphate isomerase (VIMSS) | compare |
| b2175 | spr | -1.7 | -3.0 | predicted peptidase, outer membrane lipoprotein (NCBI) | compare |
| b0742 | ybgF | -1.7 | -4.3 | hypothetical protein (NCBI) | compare |
| b1109 | ndh | -1.7 | -3.8 | respiratory NADH dehydrogenase 2/cupric reductase (NCBI) | compare |
| b0579 | ybdF | -1.7 | -2.0 | hypothetical protein (NCBI) | compare |
| b4191 | ulaR | -1.7 | -2.9 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b1832 | yebR | -1.6 | -3.7 | free methionine-(R)-sulfoxide reductase (RefSeq) | compare |
| b2683 | ygaH | -1.6 | -3.6 | predicted inner membrane protein (NCBI) | compare |
| b2991 | hybF | -1.6 | -5.2 | protein involved with the maturation of hydrogenases 1 and 2 (NCBI) | compare |
| b2939 | yqgB | -1.6 | -1.1 | predicted protein (RefSeq) | compare |
| b4139 | aspA | -1.6 | -6.5 | aspartate ammonia-lyase (aspartase) (VIMSS) | compare |
| b3207 | yrbL | -1.6 | -4.7 | hypothetical protein (NCBI) | compare |
| b3791 | rffA | -1.6 | -6.1 | TDP-4-oxo-6-deoxy-D-glucose transaminase (NCBI) | compare |
| b0113 | pdhR | -1.6 | -4.0 | transcriptional regulator of pyruvate dehydrogenase complex (NCBI) | compare |
| b0340 | cynS | -1.6 | -2.9 | cyanate hydratase (NCBI) | compare |
| b1946 | fliN | -1.6 | -3.4 | flagellar motor switch protein (NCBI) | compare |
| b4503 | yafF | -1.6 | -0.8 | no description | compare |
| b0225 | yafQ | -1.6 | -3.2 | predicted toxin of the YafQ-DinJ toxin-antitoxin system (NCBI) | compare |
| b3930 | menA | -1.6 | -10.2 | 1,4-dihydroxy-2-naphthoate octaprenyltransferase (NCBI) | compare |
| b3476 | nikA | -1.5 | -7.0 | nickel transporter subunit (NCBI) | compare |
| b0814 | ompX | -1.5 | -3.3 | outer membrane protein X (NCBI) | compare |
| b3253 | yhdH | -1.5 | -6.6 | predicted oxidoreductase, Zn-dependent and NAD(P)-binding (NCBI) | compare |
| b4414 | tff | -1.5 | -1.5 | unknown RNA (NCBI) | compare |
| b3933 | ftsN | -1.5 | -7.7 | essential cell division protein (NCBI) | compare |
| b3082 | ygjM | -1.5 | -1.0 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3479 | nikD | -1.5 | -7.0 | nickel transporter subunit (NCBI) | compare |
| b0014 | dnaK | -1.5 | -1.4 | molecular chaperone DnaK (NCBI) | compare |
| b3158 | yhbU | -1.5 | -6.2 | predicted peptidase (collagenase-like) (NCBI) | compare |
| b3478 | nikC | -1.5 | -5.8 | nickel transporter subunit (NCBI) | compare |
| b2996 | hybA | -1.5 | -5.6 | hydrogenase 2 4Fe-4S ferredoxin-type component (NCBI) | compare |
| b2906 | visC | -1.5 | -5.0 | hypothetical protein (NCBI) | compare |
| b4631 | ykgQ | -1.5 | -1.2 | no description | compare |
| b1620 | malI | -1.5 | -2.2 | DNA-binding transcriptional repressor (NCBI) | compare |
| b2366 | dsdA | -1.5 | -3.4 | D-serine dehydratase (NCBI) | compare |
| b4515 | ybgT | -1.5 | -1.2 | hypothetical protein (NCBI) | compare |
| b1082 | flgK | -1.5 | -3.7 | flagellar hook-associated protein K (NCBI) | compare |
| b1882 | cheY | -1.4 | -0.5 | chemotaxis regulator transmitting signal to flagellar motor component (NCBI) | compare |
| b1556 | b1556 | -1.4 | -1.8 | orf, hypothetical protein (VIMSS) | compare |
| b1881 | cheZ | -1.4 | -3.6 | chemotaxis regulator, protein phosphatase for CheY (NCBI) | compare |
| b0785 | moaE | -1.4 | -4.2 | molybdopterin synthase, large subunit (NCBI) | compare |
| b2666 | yqaE | -1.4 | -3.4 | predicted membrane protein (NCBI) | compare |
| b1298 | ycjL | -1.4 | -3.9 | probable amidotransferase subunit (VIMSS) | compare |
| b4203 | rplI | -1.4 | -2.7 | 50S ribosomal protein L9 (NCBI) | compare |
| b2282 | nuoH | -1.4 | -2.6 | NADH dehydrogenase subunit H (NCBI) | compare |
| b2729 | hypD | -1.4 | -6.0 | protein required for maturation of hydrogenases (NCBI) | compare |
| b0247 | ykfG | -1.4 | -0.9 | CP4-6 prophage; predicted DNA repair protein (NCBI) | compare |
| b1814 | sdaA | -1.4 | -2.5 | L-serine deaminase I (NCBI) | compare |
| b0481 | ybaK | -1.4 | -2.8 | hypothetical protein (NCBI) | compare |
| b1887 | cheW | -1.4 | -4.9 | purine-binding chemotaxis protein (NCBI) | compare |
| b2082 | ogrK | -1.4 | -2.4 | DNA-binding transcriptional regulator prophage P2 remnant (NCBI) | compare |
| b4242 | mgtA | -1.4 | -6.2 | magnesium transporter (NCBI) | compare |
| b0009 | mog | -1.4 | -5.7 | molybdenum cofactor biosynthesis protein (NCBI) | compare |
| b2994 | hybC | -1.4 | -6.5 | hydrogenase 2, large subunit (NCBI) | compare |
| b2313 | cvpA | -1.4 | -3.9 | membrane protein required for colicin V production (NCBI) | compare |
| b3786 | rffE | -1.4 | -7.9 | UDP-N-acetyl glucosamine-2-epimerase (NCBI) | compare |
| b0339 | cynT | -1.4 | -2.6 | carbonic anhydrase (NCBI) | compare |
| b1818 | manY | -1.4 | -1.1 | mannose-specific enzyme IIC component of PTS (NCBI) | compare |
| b3755 | yieP | -1.4 | -3.3 | predicted transcriptional regulator (NCBI) | compare |
| b3469 | zntA | -1.4 | -4.3 | zinc, cobalt and lead efflux system (NCBI) | compare |
| b4180 | rlmB | -1.4 | -5.7 | 23S rRNA (Gm2251)-methyltransferase (NCBI) | compare |
| b0469 | apt | -1.3 | -4.3 | adenine phosphoribosyltransferase (NCBI) | compare |
| b3247 | cafA | -1.3 | -5.4 | bundles of cytoplasmic filaments (VIMSS) | compare |
| b0053 | surA | -1.3 | -4.1 | peptidyl-prolyl cis-trans isomerase (PPIase) (NCBI) | compare |