Experiment set9IT087 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Ionizing radiation, 126.196 Gy, replicate 1

200 most detrimental genes:

  gene name fitness t score description  
AO353_27950 +1.5 2.9 hypothetical protein compare
AO353_22600 +1.3 2.3 hypothetical protein compare
AO353_22735 +1.3 3.0 hypothetical protein compare
AO353_27550 +1.2 1.8 hypothetical protein compare
AO353_26045 +1.2 2.1 hypothetical protein compare
AO353_18560 +1.2 2.3 class I peptide chain release factor compare
AO353_23860 +1.1 3.2 xanthine permease XanP compare
AO353_21355 +1.1 2.2 xylose isomerase compare
AO353_24915 +1.1 1.8 hypothetical protein compare
AO353_04055 +1.1 2.0 methionine--tRNA ligase compare
AO353_16835 +1.0 1.7 LuxR family transcriptional regulator compare
AO353_26090 +1.0 1.9 hypothetical protein compare
AO353_26810 +1.0 2.3 (2Fe-2S)-binding protein compare
AO353_15480 +1.0 2.1 hypothetical protein compare
AO353_21290 +1.0 2.4 hypothetical protein compare
AO353_29280 +1.0 1.9 hypothetical protein compare
AO353_21445 +1.0 3.0 cation:proton antiporter compare
AO353_29005 +0.9 2.1 hypothetical protein compare
AO353_03450 +0.9 3.9 heme oxygenase compare
AO353_26550 +0.9 1.4 hypothetical protein compare
AO353_22215 +0.9 2.3 hypothetical protein compare
AO353_02970 +0.9 2.0 carbon storage regulator compare
AO353_20495 +0.9 1.4 NUDIX hydrolase compare
AO353_20590 +0.8 1.9 hydrolase compare
AO353_00090 +0.8 2.2 hypothetical protein compare
AO353_18960 +0.8 1.4 terminase compare
AO353_21645 +0.8 2.0 cobalt transporter compare
AO353_27525 +0.8 2.1 AraC family transcriptional regulator compare
AO353_04410 +0.8 2.2 phosphoribosylglycinamide formyltransferase compare
AO353_27090 +0.8 1.3 hypothetical protein compare
AO353_27500 +0.8 1.5 hypothetical protein compare
AO353_12580 +0.8 1.7 type II secretory protein PulK compare
AO353_07645 +0.8 1.5 sarcosine oxidase subunit gamma compare
AO353_20865 +0.8 1.6 cold-shock protein compare
AO353_27335 +0.8 1.7 hypothetical protein compare
AO353_28210 +0.8 1.9 2-haloalkanoic acid dehalogenase compare
AO353_21805 +0.7 2.6 peptidylprolyl isomerase compare
AO353_22420 +0.7 2.3 histidine kinase compare
AO353_23295 +0.7 3.0 cystathionine beta-lyase compare
AO353_28100 +0.7 2.9 MFS transporter compare
AO353_13420 +0.7 1.8 hypothetical protein compare
AO353_00170 +0.7 1.4 lysozyme compare
AO353_25990 +0.7 2.5 aspartyl beta-hydroxylase compare
AO353_19760 +0.7 1.6 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
AO353_27710 +0.7 0.8 DNA repair protein compare
AO353_21455 +0.7 1.0 cation:proton antiporter compare
AO353_25300 +0.7 2.3 LysR family transcriptional regulator compare
AO353_00235 +0.6 1.8 transcriptional regulator compare
AO353_23070 +0.6 2.8 LysR family transcriptional regulator compare
AO353_06100 +0.6 1.1 thymidylate synthase compare
AO353_22950 +0.6 2.1 universal stress protein UspA compare
AO353_20810 +0.6 1.5 hypothetical protein compare
AO353_03370 +0.6 2.3 aldose epimerase compare
AO353_03510 +0.6 2.0 glycine cleavage system protein T compare
AO353_25430 +0.6 2.6 ABC transporter permease compare
AO353_25925 +0.6 1.2 hypothetical protein compare
AO353_25275 +0.6 2.5 hypothetical protein compare
AO353_05060 +0.6 2.2 pressure-regulated protein compare
AO353_25015 +0.6 2.0 polyketide cyclase compare
AO353_21935 +0.6 1.3 nitrite reductase compare
AO353_16635 +0.6 2.4 pyocin R2, holin compare
AO353_27445 +0.6 2.0 hypothetical protein compare
AO353_23015 +0.6 2.2 histidine kinase compare
AO353_27855 +0.6 0.9 MarR family transcriptional regulator compare
AO353_21300 +0.6 2.6 glycolate oxidase iron-sulfur subunit compare
AO353_27435 +0.6 1.1 hypothetical protein compare
AO353_05530 +0.6 2.2 hypothetical protein compare
AO353_28280 +0.6 2.6 dehalogenase compare
AO353_22810 +0.6 0.8 hypothetical protein compare
AO353_18455 +0.6 2.7 AraC family transcriptional regulator compare
AO353_23140 +0.6 1.5 aspartate dehydrogenase compare
AO353_25450 +0.6 1.2 cyanate hydratase compare
AO353_26595 +0.6 1.7 copper resistance protein CopD compare
AO353_22520 +0.6 0.9 hypothetical protein compare
AO353_16795 +0.5 2.1 lysozyme compare
AO353_25475 +0.5 1.9 multidrug resistance protein compare
AO353_01265 +0.5 1.9 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
AO353_02300 +0.5 1.2 MarR family transcriptional regulator compare
AO353_25220 +0.5 1.5 hypothetical protein compare
AO353_12395 +0.5 1.7 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
AO353_26225 +0.5 2.1 hypothetical protein compare
AO353_19600 +0.5 2.4 NAD-dependent DNA ligase compare
AO353_10090 +0.5 1.9 hypothetical protein compare
AO353_20115 +0.5 1.4 LysR family transcriptional regulator compare
AO353_27475 +0.5 2.2 glutamine synthetase compare
AO353_20245 +0.5 1.8 LysR family transcriptional regulator compare
AO353_18815 +0.5 2.4 flagellar motor protein MotD compare
AO353_06720 +0.5 1.1 NrdR family transcriptional regulator compare
AO353_25965 +0.5 1.9 hypothetical protein compare
AO353_26055 +0.5 1.1 hypothetical protein compare
AO353_03830 +0.5 1.0 antibiotic biosynthesis monooxygenase compare
AO353_03515 +0.5 0.7 cold-shock protein compare
AO353_19605 +0.5 1.0 hypothetical protein compare
AO353_19000 +0.5 1.2 ABC transporter compare
AO353_02260 +0.5 2.3 hypothetical protein compare
AO353_22220 +0.5 1.7 copper resistance protein CopC compare
AO353_21495 +0.5 1.4 short-chain dehydrogenase compare
AO353_17370 +0.5 2.6 phospholipase compare
AO353_25885 +0.5 1.7 sugar ABC transporter permease compare
AO353_28555 +0.5 0.9 LysR family transcriptional regulator compare
AO353_18925 +0.5 0.9 ATPase compare
AO353_28000 +0.5 1.8 branched-chain amino acid ABC transporter compare
AO353_28860 +0.5 1.7 hypothetical protein compare
AO353_16645 +0.5 1.6 hypothetical protein compare
AO353_08570 +0.5 3.6 transporter compare
AO353_06710 +0.5 0.9 riboflavin synthase subunit alpha compare
AO353_25550 +0.5 2.3 4-amino-4-deoxy-L-arabinose transferase compare
AO353_15545 +0.5 2.2 IclR family transcriptional regulator compare
AO353_07980 +0.5 2.4 cytochrome C compare
AO353_02735 +0.5 3.9 chemotaxis protein CheY compare
AO353_25640 +0.5 1.0 AsnC family transcriptional regulator compare
AO353_28575 +0.5 2.1 transcriptional regulator compare
AO353_18325 +0.5 1.0 hypothetical protein compare
AO353_21675 +0.5 2.2 phospholipase compare
AO353_19090 +0.5 0.9 MarR family transcriptional regulator compare
AO353_01350 +0.5 2.4 4-amino-4-deoxychorismate lyase compare
AO353_23125 +0.5 1.5 hypothetical protein compare
AO353_23550 +0.5 2.1 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
AO353_03195 +0.5 1.7 transcriptional regulator compare
AO353_14435 +0.5 1.9 Rieske (2Fe-2S) protein compare
AO353_20120 +0.5 1.4 hypothetical protein compare
AO353_13925 +0.5 0.9 XRE family transcriptional regulator compare
AO353_02200 +0.5 1.3 hypothetical protein compare
AO353_10310 +0.5 2.1 CopG family transcriptional regulator compare
AO353_23570 +0.5 1.3 LysR family transcriptional regulator compare
AO353_21735 +0.5 1.8 IclR family transcriptional regulator compare
AO353_20430 +0.5 3.0 hypothetical protein compare
AO353_01705 +0.5 1.3 alpha/beta hydrolase compare
AO353_24300 +0.5 1.9 transcriptional regulator compare
AO353_18495 +0.5 2.4 LTXXQ domain protein compare
AO353_09345 +0.5 1.2 hypothetical protein compare
AO353_24870 +0.5 1.4 hypothetical protein compare
AO353_01915 +0.5 0.9 GlcG protein compare
AO353_03210 +0.5 1.5 GNAT family acetyltransferase compare
AO353_10510 +0.5 0.9 benzoate transporter compare
AO353_23910 +0.5 1.0 response regulator compare
AO353_11790 +0.5 2.1 hypothetical protein compare
AO353_28030 +0.5 1.9 hypothetical protein compare
AO353_06325 +0.5 1.5 hypothetical protein compare
AO353_27460 +0.4 1.0 hypothetical protein compare
AO353_24080 +0.4 1.8 hypothetical protein compare
AO353_03115 +0.4 1.3 TetR family transcriptional regulator compare
AO353_09795 +0.4 1.9 hypothetical protein compare
AO353_22985 +0.4 1.2 hypothetical protein compare
AO353_22375 +0.4 1.2 cytochrome c-550 PedF compare
AO353_24955 +0.4 2.2 alkylhydroperoxidase compare
AO353_21350 +0.4 1.5 methylmalonate-semialdehyde dehydrogenase compare
AO353_04275 +0.4 2.0 polyamine ABC transporter ATP-binding protein compare
AO353_14160 +0.4 1.5 general secretion pathway protein GspH compare
AO353_27455 +0.4 1.6 hypothetical protein compare
AO353_09030 +0.4 1.2 iron donor protein CyaY compare
AO353_20535 +0.4 1.5 hypothetical protein compare
AO353_17140 +0.4 1.9 2-hydroxy-3-oxopropionate reductase compare
AO353_07535 +0.4 1.8 ModE family transcriptional regulator compare
AO353_24780 +0.4 2.0 glutamine synthetase compare
AO353_12465 +0.4 2.0 hypothetical protein compare
AO353_19290 +0.4 1.0 molybdenum cofactor sulfurase compare
AO353_27520 +0.4 1.6 3-demethylubiquinone-9 3-methyltransferase compare
AO353_00165 +0.4 2.0 lysis protein compare
AO353_21975 +0.4 1.9 AAA family ATPase compare
AO353_02525 +0.4 1.7 molecular chaperone compare
AO353_11015 +0.4 2.2 ABC transporter permease compare
AO353_27825 +0.4 1.0 peptidylprolyl isomerase compare
AO353_00295 +0.4 2.6 tRNA-dihydrouridine synthase A compare
AO353_17945 +0.4 0.9 cyclic nucleotide-binding protein compare
AO353_20040 +0.4 1.7 hypothetical protein compare
AO353_19705 +0.4 2.1 VWA containing CoxE family protein compare
AO353_24840 +0.4 2.1 acyl-CoA synthetase compare
AO353_21585 +0.4 1.7 hydroxyacid dehydrogenase compare
AO353_09720 +0.4 0.4 hypothetical protein compare
AO353_22830 +0.4 1.0 cupin compare
AO353_25490 +0.4 1.4 transcriptional regulator compare
AO353_00030 +0.4 1.9 glutathione S-transferase compare
AO353_20850 +0.4 2.1 hypothetical protein compare
AO353_03410 +0.4 1.2 chemotaxis protein CheY compare
AO353_24765 +0.4 1.2 GCN5 family acetyltransferase compare
AO353_23880 +0.4 1.1 ATPase compare
AO353_20840 +0.4 0.8 ribose pyranase compare
AO353_09705 +0.4 1.0 hypothetical protein compare
AO353_27890 +0.4 1.8 RpiR family transcriptional regulator compare
AO353_02185 +0.4 2.5 short-chain dehydrogenase compare
AO353_26210 +0.4 1.6 hypothetical protein compare
AO353_22720 +0.4 1.7 curli production assembly protein CsgG compare
AO353_02990 +0.4 1.6 6,7-dimethyl-8-ribityllumazine synthase compare
AO353_01305 +0.4 2.4 hypothetical protein compare
AO353_18750 +0.4 2.0 flagellar biosynthetic protein FliQ compare
AO353_13600 +0.4 1.3 precorrin-6Y C5,15-methyltransferase compare
AO353_25035 +0.4 1.5 integrase compare
AO353_04885 +0.4 2.1 multifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/5'-nucleotidase/3'-nucleotidase compare
AO353_10445 +0.4 0.6 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_02860 +0.4 1.9 flagellar biosynthesis protein FlgB compare
AO353_03540 +0.4 2.0 7-carboxy-7-deazaguanine synthase compare
AO353_28520 +0.4 1.5 LysR family transcriptional regulator compare
AO353_02175 +0.4 0.9 carbon storage regulator compare
AO353_20265 +0.4 1.0 spore coat protein compare
AO353_23265 +0.4 1.7 chromate resistance protein compare
AO353_14150 +0.4 0.6 peptidylprolyl isomerase compare
AO353_21490 +0.4 2.0 1-carboxy-3-chloro-3,4-dihydroxycyclo hexa-1,5-diene dehydrogenase compare
AO353_18665 +0.4 2.3 histidine kinase compare
AO353_03815 +0.4 0.8 heme utilization protein compare


Specific Phenotypes

For 5 genes in this experiment

For radiation Ionizing radiation in Pseudomonas fluorescens FW300-N2E3

For radiation Ionizing radiation across organisms